==40506== Memcheck, a memory error detector ==40506== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40506== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40506== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40506== Parent PID: 24133 ==40506== ==40506== ==40506== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40506== Open file descriptor 12: ==40506== at 0x112600ED: pipe (pipe.c:29) ==40506== by 0x1B3F007D: ??? ==40506== by 0x144324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40506== by 0x11B58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40506== by 0x11AF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40506== by 0x11C9DD38: PetscInitialize (pinit.c:924) ==40506== by 0x10A9AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40506== by 0x10A9AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40506== by 0x23B3A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40506== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40506== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40506== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40506== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40506== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40506== ==40506== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40506== at 0x11264A8C: __open_nocancel (open64_nocancel.c:39) ==40506== by 0x111E8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40506== by 0x6122822: ??? ==40506== by 0x612296F: ??? ==40506== by 0x144D76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40506== by 0x144D7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40506== by 0x1448D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40506== by 0x144322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40506== by 0x11B58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40506== by 0x11AF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40506== by 0x11C9DD38: PetscInitialize (pinit.c:924) ==40506== by 0x10A9AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40506== by 0x10A9AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40506== by 0x23B3A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40506== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40506== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40506== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40506== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40506== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40506== ==40506== Open file descriptor 145: ==40506== ==40506== ==40506== Open file descriptor 142: ==40506== ==40506== ==40506== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40506== ==40506== ==40506== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40506== ==40506== ==40506== ==40506== HEAP SUMMARY: ==40506== in use at exit: 618,366 bytes in 8,236 blocks ==40506== total heap usage: 6,310,792 allocs, 6,302,556 frees, 2,059,218,327 bytes allocated ==40506== ==40506== LEAK SUMMARY: ==40506== definitely lost: 0 bytes in 0 blocks ==40506== indirectly lost: 0 bytes in 0 blocks ==40506== possibly lost: 0 bytes in 0 blocks ==40506== still reachable: 56 bytes in 3 blocks ==40506== suppressed: 618,310 bytes in 8,233 blocks ==40506== Reachable blocks (those to which a pointer was found) are not shown. ==40506== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40506== ==40506== For lists of detected and suppressed errors, rerun with: -s ==40506== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)