==24868== Memcheck, a memory error detector ==24868== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==24868== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==24868== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==24868== Parent PID: 24607 ==24868== ==24868== ==24868== FILE DESCRIPTORS: 9 open (3 std) at exit. ==24868== Open file descriptor 12: ==24868== at 0x65A20ED: pipe (pipe.c:29) ==24868== by 0xAF2E07D: ??? ==24868== by 0x8F4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==24868== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24868== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24868== by 0x49C3D38: PetscInitialize (pinit.c:924) ==24868== by 0x60D3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==24868== by 0x60D3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==24868== by 0x11BB5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==24868== by 0x117073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==24868== by 0x119BCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==24868== by 0x119A6A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==24868== by 0x11A101: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==24868== by 0x1151F5: main (TestHdf5DataReader.cpp:19) ==24868== ==24868== Open file descriptor 8: /dev/shm/open_mpi.0000 ==24868== at 0x65A6A8C: __open_nocancel (open64_nocancel.c:39) ==24868== by 0x652ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==24868== by 0x5C53822: ??? ==24868== by 0x5C5396F: ??? ==24868== by 0x8FF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24868== by 0x8FF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24868== by 0x8FA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24868== by 0x8F4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==24868== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24868== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24868== by 0x49C3D38: PetscInitialize (pinit.c:924) ==24868== by 0x60D3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==24868== by 0x60D3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==24868== by 0x11BB5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==24868== by 0x117073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==24868== by 0x119BCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==24868== by 0x119A6A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==24868== by 0x11A101: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==24868== by 0x1151F5: main (TestHdf5DataReader.cpp:19) ==24868== ==24868== Open file descriptor 145: ==24868== ==24868== ==24868== Open file descriptor 142: ==24868== ==24868== ==24868== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==24868== ==24868== ==24868== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==24868== ==24868== ==24868== ==24868== HEAP SUMMARY: ==24868== in use at exit: 618,407 bytes in 8,249 blocks ==24868== total heap usage: 58,777 allocs, 50,528 frees, 1,349,304,970 bytes allocated ==24868== ==24868== LEAK SUMMARY: ==24868== definitely lost: 0 bytes in 0 blocks ==24868== indirectly lost: 0 bytes in 0 blocks ==24868== possibly lost: 0 bytes in 0 blocks ==24868== still reachable: 24 bytes in 2 blocks ==24868== suppressed: 618,383 bytes in 8,247 blocks ==24868== Reachable blocks (those to which a pointer was found) are not shown. ==24868== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==24868== ==24868== For lists of detected and suppressed errors, rerun with: -s ==24868== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)