==25034== Memcheck, a memory error detector ==25034== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25034== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25034== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==25034== Parent PID: 24752 ==25034== ==25034== Warning: invalid file descriptor -1 in syscall close() ==25034== ==25034== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25034== Open file descriptor 12: ==25034== at 0x65A20ED: pipe (pipe.c:29) ==25034== by 0xAF2E07D: ??? ==25034== by 0x8F4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25034== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25034== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25034== by 0x49C3D38: PetscInitialize (pinit.c:924) ==25034== by 0x60D3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25034== by 0x60D3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25034== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25034== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25034== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25034== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25034== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25034== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==25034== ==25034== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25034== at 0x65A6A8C: __open_nocancel (open64_nocancel.c:39) ==25034== by 0x652ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25034== by 0x5C53822: ??? ==25034== by 0x5C5396F: ??? ==25034== by 0x8FF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25034== by 0x8FF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25034== by 0x8FA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25034== by 0x8F4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25034== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25034== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25034== by 0x49C3D38: PetscInitialize (pinit.c:924) ==25034== by 0x60D3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25034== by 0x60D3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25034== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25034== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25034== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25034== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25034== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25034== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==25034== ==25034== Open file descriptor 145: ==25034== ==25034== ==25034== Open file descriptor 142: ==25034== ==25034== ==25034== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==25034== ==25034== ==25034== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25034== ==25034== ==25034== ==25034== HEAP SUMMARY: ==25034== in use at exit: 618,407 bytes in 8,249 blocks ==25034== total heap usage: 114,804 allocs, 106,555 frees, 1,413,002,784 bytes allocated ==25034== ==25034== LEAK SUMMARY: ==25034== definitely lost: 0 bytes in 0 blocks ==25034== indirectly lost: 0 bytes in 0 blocks ==25034== possibly lost: 0 bytes in 0 blocks ==25034== still reachable: 24 bytes in 2 blocks ==25034== suppressed: 618,383 bytes in 8,247 blocks ==25034== Reachable blocks (those to which a pointer was found) are not shown. ==25034== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25034== ==25034== For lists of detected and suppressed errors, rerun with: -s ==25034== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)