==40358== Memcheck, a memory error detector ==40358== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40358== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40358== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulationBoundaryCondition -malloc_debug -malloc_dump -memory_info ==40358== Parent PID: 23996 ==40358== ==40358== ==40358== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40358== Open file descriptor 12: ==40358== at 0x1262E0ED: pipe (pipe.c:29) ==40358== by 0x1B3EE07D: ??? ==40358== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40358== by 0x11F36418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40358== by 0x11ECFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40358== by 0x6277D38: PetscInitialize (pinit.c:924) ==40358== by 0x11E18E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40358== by 0x11E18EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40358== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40358== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40358== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40358== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40358== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40358== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==40358== ==40358== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40358== at 0x12632A8C: __open_nocancel (open64_nocancel.c:39) ==40358== by 0x125B6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40358== by 0x6122822: ??? ==40358== by 0x612296F: ??? ==40358== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40358== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40358== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40358== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40358== by 0x11F36418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40358== by 0x11ECFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40358== by 0x6277D38: PetscInitialize (pinit.c:924) ==40358== by 0x11E18E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40358== by 0x11E18EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40358== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40358== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40358== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40358== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40358== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40358== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==40358== ==40358== Open file descriptor 145: ==40358== ==40358== ==40358== Open file descriptor 142: ==40358== ==40358== ==40358== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulationBoundaryCondition_valgrind.txt ==40358== ==40358== ==40358== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40358== ==40358== ==40358== ==40358== HEAP SUMMARY: ==40358== in use at exit: 618,519 bytes in 8,241 blocks ==40358== total heap usage: 70,497 allocs, 62,256 frees, 1,343,385,122 bytes allocated ==40358== ==40358== LEAK SUMMARY: ==40358== definitely lost: 0 bytes in 0 blocks ==40358== indirectly lost: 0 bytes in 0 blocks ==40358== possibly lost: 0 bytes in 0 blocks ==40358== still reachable: 136 bytes in 4 blocks ==40358== suppressed: 618,383 bytes in 8,237 blocks ==40358== Reachable blocks (those to which a pointer was found) are not shown. ==40358== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40358== ==40358== For lists of detected and suppressed errors, rerun with: -s ==40358== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)