==25999== Memcheck, a memory error detector ==25999== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25999== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25999== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==25999== Parent PID: 23968 ==25999== ==25999== ==25999== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25999== Open file descriptor 12: ==25999== at 0xF9A00ED: pipe (pipe.c:29) ==25999== by 0x1972D07D: ??? ==25999== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25999== by 0x10298418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25999== by 0x10231D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25999== by 0x103DDD38: PetscInitialize (pinit.c:924) ==25999== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25999== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25999== by 0x2F3CF0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25999== by 0x2EA679: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25999== by 0x2EEFB0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25999== by 0x2EEE50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25999== by 0x2EF4E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25999== by 0x2E8A95: main (TestMeshBasedCellPopulation.cpp:19) ==25999== ==25999== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25999== at 0xF9A4A8C: __open_nocancel (open64_nocancel.c:39) ==25999== by 0xF928BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25999== by 0xF1B3822: ??? ==25999== by 0xF1B396F: ??? ==25999== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25999== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25999== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25999== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25999== by 0x10298418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25999== by 0x10231D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25999== by 0x103DDD38: PetscInitialize (pinit.c:924) ==25999== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25999== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25999== by 0x2F3CF0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25999== by 0x2EA679: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25999== by 0x2EEFB0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25999== by 0x2EEE50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25999== by 0x2EF4E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25999== by 0x2E8A95: main (TestMeshBasedCellPopulation.cpp:19) ==25999== ==25999== Open file descriptor 145: ==25999== ==25999== ==25999== Open file descriptor 142: ==25999== ==25999== ==25999== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulation_valgrind.txt ==25999== ==25999== ==25999== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25999== ==25999== ==25999== ==25999== HEAP SUMMARY: ==25999== in use at exit: 618,423 bytes in 8,240 blocks ==25999== total heap usage: 147,923 allocs, 139,683 frees, 1,367,291,046 bytes allocated ==25999== ==25999== LEAK SUMMARY: ==25999== definitely lost: 0 bytes in 0 blocks ==25999== indirectly lost: 0 bytes in 0 blocks ==25999== possibly lost: 0 bytes in 0 blocks ==25999== still reachable: 56 bytes in 3 blocks ==25999== suppressed: 618,367 bytes in 8,237 blocks ==25999== Reachable blocks (those to which a pointer was found) are not shown. ==25999== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25999== ==25999== For lists of detected and suppressed errors, rerun with: -s ==25999== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)