==27158== Memcheck, a memory error detector ==27158== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27158== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27158== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27158== Parent PID: 23968 ==27158== ==27158== ==27158== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27158== Open file descriptor 12: ==27158== at 0x10E550ED: pipe (pipe.c:29) ==27158== by 0x1972D07D: ??? ==27158== by 0x14CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27158== by 0x109BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27158== by 0x10954D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27158== by 0xF64BD38: PetscInitialize (pinit.c:924) ==27158== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27158== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27158== by 0x1FFF4F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27158== by 0x1F9AF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27158== by 0x1FD464: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27158== by 0x1FD304: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27158== by 0x1FD99B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27158== by 0x1F7F15: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27158== ==27158== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27158== at 0x10E59A8C: __open_nocancel (open64_nocancel.c:39) ==27158== by 0x10DDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27158== by 0xF1B3822: ??? ==27158== by 0xF1B396F: ??? ==27158== by 0x14D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27158== by 0x14D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27158== by 0x14D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27158== by 0x14CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27158== by 0x109BB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27158== by 0x10954D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27158== by 0xF64BD38: PetscInitialize (pinit.c:924) ==27158== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27158== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27158== by 0x1FFF4F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27158== by 0x1F9AF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27158== by 0x1FD464: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27158== by 0x1FD304: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27158== by 0x1FD99B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27158== by 0x1F7F15: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27158== ==27158== Open file descriptor 145: ==27158== ==27158== ==27158== Open file descriptor 142: ==27158== ==27158== ==27158== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27158== ==27158== ==27158== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27158== ==27158== ==27158== ==27158== HEAP SUMMARY: ==27158== in use at exit: 618,350 bytes in 8,236 blocks ==27158== total heap usage: 9,703,024 allocs, 9,694,788 frees, 2,583,863,736 bytes allocated ==27158== ==27158== LEAK SUMMARY: ==27158== definitely lost: 0 bytes in 0 blocks ==27158== indirectly lost: 0 bytes in 0 blocks ==27158== possibly lost: 0 bytes in 0 blocks ==27158== still reachable: 56 bytes in 3 blocks ==27158== suppressed: 618,294 bytes in 8,233 blocks ==27158== Reachable blocks (those to which a pointer was found) are not shown. ==27158== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27158== ==27158== For lists of detected and suppressed errors, rerun with: -s ==27158== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)