==40078== Memcheck, a memory error detector ==40078== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40078== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40078== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40078== Parent PID: 23998 ==40078== ==40078== ==40078== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40078== Open file descriptor 12: ==40078== at 0xF95C0ED: pipe (pipe.c:29) ==40078== by 0x1972D07D: ??? ==40078== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40078== by 0x10256418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40078== by 0x101EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40078== by 0x103DDD38: PetscInitialize (pinit.c:924) ==40078== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40078== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40078== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40078== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40078== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40078== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40078== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40078== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40078== ==40078== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40078== at 0xF960A8C: __open_nocancel (open64_nocancel.c:39) ==40078== by 0xF8E4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40078== by 0xF1B3822: ??? ==40078== by 0xF1B396F: ??? ==40078== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40078== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40078== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40078== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40078== by 0x10256418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40078== by 0x101EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40078== by 0x103DDD38: PetscInitialize (pinit.c:924) ==40078== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40078== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40078== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40078== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40078== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40078== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40078== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40078== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40078== ==40078== Open file descriptor 145: ==40078== ==40078== ==40078== Open file descriptor 142: ==40078== ==40078== ==40078== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40078== ==40078== ==40078== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40078== ==40078== ==40078== ==40078== HEAP SUMMARY: ==40078== in use at exit: 618,423 bytes in 8,240 blocks ==40078== total heap usage: 725,430 allocs, 717,190 frees, 1,726,751,518 bytes allocated ==40078== ==40078== LEAK SUMMARY: ==40078== definitely lost: 0 bytes in 0 blocks ==40078== indirectly lost: 0 bytes in 0 blocks ==40078== possibly lost: 0 bytes in 0 blocks ==40078== still reachable: 56 bytes in 3 blocks ==40078== suppressed: 618,367 bytes in 8,237 blocks ==40078== Reachable blocks (those to which a pointer was found) are not shown. ==40078== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40078== ==40078== For lists of detected and suppressed errors, rerun with: -s ==40078== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)