==40177== Memcheck, a memory error detector ==40177== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40177== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40177== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40177== Parent PID: 24016 ==40177== ==40177== ==40177== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40177== Open file descriptor 12: ==40177== at 0x10C0C0ED: pipe (pipe.c:29) ==40177== by 0x1B3EE07D: ??? ==40177== by 0x1558D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40177== by 0x10514418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40177== by 0x104ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40177== by 0x6277D38: PetscInitialize (pinit.c:924) ==40177== by 0x103F6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40177== by 0x103F6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40177== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40177== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40177== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40177== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40177== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40177== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40177== ==40177== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40177== at 0x10C10A8C: __open_nocancel (open64_nocancel.c:39) ==40177== by 0x10B94BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40177== by 0x611C822: ??? ==40177== by 0x611C96F: ??? ==40177== by 0x156326DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40177== by 0x15632938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40177== by 0x155E8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40177== by 0x1558D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40177== by 0x10514418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40177== by 0x104ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40177== by 0x6277D38: PetscInitialize (pinit.c:924) ==40177== by 0x103F6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40177== by 0x103F6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40177== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40177== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40177== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40177== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40177== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40177== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40177== ==40177== Open file descriptor 145: ==40177== ==40177== ==40177== Open file descriptor 142: ==40177== ==40177== ==40177== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==40177== ==40177== ==40177== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40177== ==40177== ==40177== ==40177== HEAP SUMMARY: ==40177== in use at exit: 618,503 bytes in 8,241 blocks ==40177== total heap usage: 862,000 allocs, 853,759 frees, 1,461,247,688 bytes allocated ==40177== ==40177== LEAK SUMMARY: ==40177== definitely lost: 0 bytes in 0 blocks ==40177== indirectly lost: 0 bytes in 0 blocks ==40177== possibly lost: 0 bytes in 0 blocks ==40177== still reachable: 120 bytes in 4 blocks ==40177== suppressed: 618,383 bytes in 8,237 blocks ==40177== Reachable blocks (those to which a pointer was found) are not shown. ==40177== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40177== ==40177== For lists of detected and suppressed errors, rerun with: -s ==40177== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)