==40086== Memcheck, a memory error detector ==40086== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40086== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40086== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40086== Parent PID: 24016 ==40086== ==40086== ==40086== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40086== Open file descriptor 12: ==40086== at 0xFC120ED: pipe (pipe.c:29) ==40086== by 0x1972D07D: ??? ==40086== by 0x12B6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40086== by 0x1016D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40086== by 0x10106D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40086== by 0x102F6D38: PetscInitialize (pinit.c:924) ==40086== by 0xF512E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40086== by 0xF512EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40086== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40086== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40086== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40086== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40086== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40086== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40086== ==40086== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40086== at 0xFC16A8C: __open_nocancel (open64_nocancel.c:39) ==40086== by 0xFB9ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40086== by 0xF54A822: ??? ==40086== by 0xF54A96F: ??? ==40086== by 0x12C146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40086== by 0x12C14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40086== by 0x12BCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40086== by 0x12B6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40086== by 0x1016D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40086== by 0x10106D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40086== by 0x102F6D38: PetscInitialize (pinit.c:924) ==40086== by 0xF512E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40086== by 0xF512EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40086== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40086== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40086== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40086== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40086== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40086== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40086== ==40086== Open file descriptor 145: ==40086== ==40086== ==40086== Open file descriptor 142: ==40086== ==40086== ==40086== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==40086== ==40086== ==40086== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40086== ==40086== ==40086== ==40086== HEAP SUMMARY: ==40086== in use at exit: 618,350 bytes in 8,236 blocks ==40086== total heap usage: 2,094,044 allocs, 2,085,808 frees, 1,709,414,677 bytes allocated ==40086== ==40086== LEAK SUMMARY: ==40086== definitely lost: 0 bytes in 0 blocks ==40086== indirectly lost: 0 bytes in 0 blocks ==40086== possibly lost: 0 bytes in 0 blocks ==40086== still reachable: 56 bytes in 3 blocks ==40086== suppressed: 618,294 bytes in 8,233 blocks ==40086== Reachable blocks (those to which a pointer was found) are not shown. ==40086== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40086== ==40086== For lists of detected and suppressed errors, rerun with: -s ==40086== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)