==26729== Memcheck, a memory error detector ==26729== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26729== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26729== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==26729== Parent PID: 24011 ==26729== ==26729== ==26729== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26729== Open file descriptor 12: ==26729== at 0xF95F0ED: pipe (pipe.c:29) ==26729== by 0x1973107D: ??? ==26729== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26729== by 0x10259418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26729== by 0x101F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26729== by 0x103E0D38: PetscInitialize (pinit.c:924) ==26729== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26729== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26729== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26729== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26729== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26729== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26729== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26729== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26729== ==26729== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26729== at 0xF963A8C: __open_nocancel (open64_nocancel.c:39) ==26729== by 0xF8E7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26729== by 0xF1B0822: ??? ==26729== by 0xF1B096F: ??? ==26729== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26729== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26729== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26729== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26729== by 0x10259418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26729== by 0x101F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26729== by 0x103E0D38: PetscInitialize (pinit.c:924) ==26729== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26729== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26729== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26729== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26729== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26729== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26729== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26729== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26729== ==26729== Open file descriptor 145: ==26729== ==26729== ==26729== Open file descriptor 142: ==26729== ==26729== ==26729== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==26729== ==26729== ==26729== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26729== ==26729== ==26729== ==26729== HEAP SUMMARY: ==26729== in use at exit: 618,350 bytes in 8,236 blocks ==26729== total heap usage: 7,126,971 allocs, 7,118,735 frees, 9,040,291,738 bytes allocated ==26729== ==26729== LEAK SUMMARY: ==26729== definitely lost: 0 bytes in 0 blocks ==26729== indirectly lost: 0 bytes in 0 blocks ==26729== possibly lost: 0 bytes in 0 blocks ==26729== still reachable: 56 bytes in 3 blocks ==26729== suppressed: 618,294 bytes in 8,233 blocks ==26729== Reachable blocks (those to which a pointer was found) are not shown. ==26729== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26729== ==26729== For lists of detected and suppressed errors, rerun with: -s ==26729== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)