==35470== Memcheck, a memory error detector ==35470== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==35470== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==35470== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==35470== Parent PID: 24011 ==35470== ==35470== ==35470== FILE DESCRIPTORS: 9 open (3 std) at exit. ==35470== Open file descriptor 12: ==35470== at 0xF9A30ED: pipe (pipe.c:29) ==35470== by 0x1973107D: ??? ==35470== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35470== by 0x1029B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35470== by 0x10234D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35470== by 0x103E0D38: PetscInitialize (pinit.c:924) ==35470== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35470== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35470== by 0x1D7694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35470== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35470== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35470== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35470== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35470== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35470== ==35470== Open file descriptor 8: /dev/shm/open_mpi.0000 ==35470== at 0xF9A7A8C: __open_nocancel (open64_nocancel.c:39) ==35470== by 0xF92BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==35470== by 0xF1B0822: ??? ==35470== by 0xF1B096F: ??? ==35470== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35470== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35470== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35470== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35470== by 0x1029B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35470== by 0x10234D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35470== by 0x103E0D38: PetscInitialize (pinit.c:924) ==35470== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35470== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35470== by 0x1D7694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35470== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35470== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35470== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35470== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35470== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35470== ==35470== Open file descriptor 145: ==35470== ==35470== ==35470== Open file descriptor 142: ==35470== ==35470== ==35470== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==35470== ==35470== ==35470== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==35470== ==35470== ==35470== ==35470== HEAP SUMMARY: ==35470== in use at exit: 618,366 bytes in 8,237 blocks ==35470== total heap usage: 11,682,543 allocs, 11,674,306 frees, 2,208,526,879 bytes allocated ==35470== ==35470== LEAK SUMMARY: ==35470== definitely lost: 0 bytes in 0 blocks ==35470== indirectly lost: 0 bytes in 0 blocks ==35470== possibly lost: 0 bytes in 0 blocks ==35470== still reachable: 72 bytes in 4 blocks ==35470== suppressed: 618,294 bytes in 8,233 blocks ==35470== Reachable blocks (those to which a pointer was found) are not shown. ==35470== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==35470== ==35470== For lists of detected and suppressed errors, rerun with: -s ==35470== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)