==26094== Memcheck, a memory error detector ==26094== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26094== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26094== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info ==26094== Parent PID: 24069 ==26094== ==26094== ==26094== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26094== Open file descriptor 12: ==26094== at 0xF9A30ED: pipe (pipe.c:29) ==26094== by 0x1973107D: ??? ==26094== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26094== by 0x1029B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26094== by 0x10234D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26094== by 0x103E0D38: PetscInitialize (pinit.c:924) ==26094== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26094== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26094== by 0x2E2C5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26094== by 0x2D9459: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26094== by 0x2DDE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26094== by 0x2DDCC4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26094== by 0x2DE35B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26094== by 0x2D7875: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==26094== ==26094== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26094== at 0xF9A7A8C: __open_nocancel (open64_nocancel.c:39) ==26094== by 0xF92BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26094== by 0xF1B0822: ??? ==26094== by 0xF1B096F: ??? ==26094== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26094== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26094== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26094== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26094== by 0x1029B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26094== by 0x10234D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26094== by 0x103E0D38: PetscInitialize (pinit.c:924) ==26094== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26094== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26094== by 0x2E2C5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26094== by 0x2D9459: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26094== by 0x2DDE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26094== by 0x2DDCC4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26094== by 0x2DE35B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26094== by 0x2D7875: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==26094== ==26094== Open file descriptor 145: ==26094== ==26094== ==26094== Open file descriptor 142: ==26094== ==26094== ==26094== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt ==26094== ==26094== ==26094== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26094== ==26094== ==26094== ==26094== HEAP SUMMARY: ==26094== in use at exit: 618,423 bytes in 8,240 blocks ==26094== total heap usage: 111,897 allocs, 103,657 frees, 1,346,970,320 bytes allocated ==26094== ==26094== LEAK SUMMARY: ==26094== definitely lost: 0 bytes in 0 blocks ==26094== indirectly lost: 0 bytes in 0 blocks ==26094== possibly lost: 0 bytes in 0 blocks ==26094== still reachable: 56 bytes in 3 blocks ==26094== suppressed: 618,367 bytes in 8,237 blocks ==26094== Reachable blocks (those to which a pointer was found) are not shown. ==26094== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26094== ==26094== For lists of detected and suppressed errors, rerun with: -s ==26094== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)