==26663== Memcheck, a memory error detector ==26663== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26663== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26663== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26663== Parent PID: 24069 ==26663== ==26663== ==26663== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26663== Open file descriptor 12: ==26663== at 0xF9A30ED: pipe (pipe.c:29) ==26663== by 0x1973107D: ??? ==26663== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26663== by 0x1029B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26663== by 0x10234D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26663== by 0x103E0D38: PetscInitialize (pinit.c:924) ==26663== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26663== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26663== by 0x2136B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26663== by 0x20AE59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26663== by 0x20EAA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26663== by 0x20E948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26663== by 0x20EFDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26663== by 0x209275: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==26663== ==26663== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26663== at 0xF9A7A8C: __open_nocancel (open64_nocancel.c:39) ==26663== by 0xF92BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26663== by 0xF1B0822: ??? ==26663== by 0xF1B096F: ??? ==26663== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26663== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26663== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26663== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26663== by 0x1029B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26663== by 0x10234D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26663== by 0x103E0D38: PetscInitialize (pinit.c:924) ==26663== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26663== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26663== by 0x2136B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26663== by 0x20AE59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26663== by 0x20EAA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26663== by 0x20E948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26663== by 0x20EFDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26663== by 0x209275: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==26663== ==26663== Open file descriptor 145: ==26663== ==26663== ==26663== Open file descriptor 142: ==26663== ==26663== ==26663== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt ==26663== ==26663== ==26663== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26663== ==26663== ==26663== ==26663== HEAP SUMMARY: ==26663== in use at exit: 618,382 bytes in 8,237 blocks ==26663== total heap usage: 18,276,814 allocs, 18,268,577 frees, 30,047,796,241 bytes allocated ==26663== ==26663== LEAK SUMMARY: ==26663== definitely lost: 0 bytes in 0 blocks ==26663== indirectly lost: 0 bytes in 0 blocks ==26663== possibly lost: 0 bytes in 0 blocks ==26663== still reachable: 88 bytes in 4 blocks ==26663== suppressed: 618,294 bytes in 8,233 blocks ==26663== Reachable blocks (those to which a pointer was found) are not shown. ==26663== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26663== ==26663== For lists of detected and suppressed errors, rerun with: -s ==26663== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)