==41255== Memcheck, a memory error detector ==41255== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41255== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41255== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==41255== Parent PID: 24649 ==41255== ==41255== ==41255== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41255== Open file descriptor 12: ==41255== at 0x126310ED: pipe (pipe.c:29) ==41255== by 0x1B3F207D: ??? ==41255== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41255== by 0x11F39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41255== by 0x11ED2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41255== by 0x6277D38: PetscInitialize (pinit.c:924) ==41255== by 0x11E1BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41255== by 0x11E1BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41255== by 0x2244A1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41255== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41255== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41255== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41255== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41255== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==41255== ==41255== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41255== at 0x12635A8C: __open_nocancel (open64_nocancel.c:39) ==41255== by 0x125B9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41255== by 0x611C822: ??? ==41255== by 0x611C96F: ??? ==41255== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41255== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41255== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41255== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41255== by 0x11F39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41255== by 0x11ED2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41255== by 0x6277D38: PetscInitialize (pinit.c:924) ==41255== by 0x11E1BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41255== by 0x11E1BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41255== by 0x2244A1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41255== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41255== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41255== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41255== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41255== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==41255== ==41255== Open file descriptor 145: ==41255== ==41255== ==41255== Open file descriptor 142: ==41255== ==41255== ==41255== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==41255== ==41255== ==41255== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41255== ==41255== ==41255== ==41255== HEAP SUMMARY: ==41255== in use at exit: 638,001 bytes in 8,474 blocks ==41255== total heap usage: 3,714,470 allocs, 3,705,996 frees, 1,621,834,368 bytes allocated ==41255== ==41255== LEAK SUMMARY: ==41255== definitely lost: 0 bytes in 0 blocks ==41255== indirectly lost: 0 bytes in 0 blocks ==41255== possibly lost: 0 bytes in 0 blocks ==41255== still reachable: 56 bytes in 3 blocks ==41255== suppressed: 637,945 bytes in 8,471 blocks ==41255== Reachable blocks (those to which a pointer was found) are not shown. ==41255== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41255== ==41255== For lists of detected and suppressed errors, rerun with: -s ==41255== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)