==27939== Memcheck, a memory error detector ==27939== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27939== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27939== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27939== Parent PID: 24649 ==27939== ==27939== ==27939== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27939== Open file descriptor 12: ==27939== at 0x10E580ED: pipe (pipe.c:29) ==27939== by 0x1973107D: ??? ==27939== by 0x14CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27939== by 0x109BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27939== by 0x10957D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27939== by 0xF64ED38: PetscInitialize (pinit.c:924) ==27939== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27939== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27939== by 0x1FFF4F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27939== by 0x1F9AF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27939== by 0x1FD464: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27939== by 0x1FD304: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27939== by 0x1FD99B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27939== by 0x1F7F15: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27939== ==27939== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27939== at 0x10E5CA8C: __open_nocancel (open64_nocancel.c:39) ==27939== by 0x10DE0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27939== by 0xF1B0822: ??? ==27939== by 0xF1B096F: ??? ==27939== by 0x14D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27939== by 0x14D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27939== by 0x14D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27939== by 0x14CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27939== by 0x109BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27939== by 0x10957D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27939== by 0xF64ED38: PetscInitialize (pinit.c:924) ==27939== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27939== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27939== by 0x1FFF4F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27939== by 0x1F9AF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27939== by 0x1FD464: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27939== by 0x1FD304: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27939== by 0x1FD99B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27939== by 0x1F7F15: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27939== ==27939== Open file descriptor 145: ==27939== ==27939== ==27939== Open file descriptor 142: ==27939== ==27939== ==27939== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27939== ==27939== ==27939== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27939== ==27939== ==27939== ==27939== HEAP SUMMARY: ==27939== in use at exit: 637,985 bytes in 8,474 blocks ==27939== total heap usage: 9,703,562 allocs, 9,695,088 frees, 2,585,027,665 bytes allocated ==27939== ==27939== LEAK SUMMARY: ==27939== definitely lost: 0 bytes in 0 blocks ==27939== indirectly lost: 0 bytes in 0 blocks ==27939== possibly lost: 0 bytes in 0 blocks ==27939== still reachable: 56 bytes in 3 blocks ==27939== suppressed: 637,929 bytes in 8,471 blocks ==27939== Reachable blocks (those to which a pointer was found) are not shown. ==27939== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27939== ==27939== For lists of detected and suppressed errors, rerun with: -s ==27939== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)