==40923== Memcheck, a memory error detector ==40923== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40923== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40923== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40923== Parent PID: 24649 ==40923== ==40923== ==40923== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40923== Open file descriptor 12: ==40923== at 0xFC150ED: pipe (pipe.c:29) ==40923== by 0x1973107D: ??? ==40923== by 0x12B6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40923== by 0x10170418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40923== by 0x10109D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40923== by 0x102F9D38: PetscInitialize (pinit.c:924) ==40923== by 0xF515E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40923== by 0xF515EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40923== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40923== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40923== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40923== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40923== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40923== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40923== ==40923== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40923== at 0xFC19A8C: __open_nocancel (open64_nocancel.c:39) ==40923== by 0xFB9DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40923== by 0xF54D822: ??? ==40923== by 0xF54D96F: ??? ==40923== by 0x12C146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40923== by 0x12C14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40923== by 0x12BCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40923== by 0x12B6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40923== by 0x10170418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40923== by 0x10109D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40923== by 0x102F9D38: PetscInitialize (pinit.c:924) ==40923== by 0xF515E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40923== by 0xF515EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40923== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40923== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40923== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40923== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40923== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40923== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==40923== ==40923== Open file descriptor 145: ==40923== ==40923== ==40923== Open file descriptor 142: ==40923== ==40923== ==40923== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==40923== ==40923== ==40923== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40923== ==40923== ==40923== ==40923== HEAP SUMMARY: ==40923== in use at exit: 637,985 bytes in 8,474 blocks ==40923== total heap usage: 2,094,572 allocs, 2,086,098 frees, 1,710,578,590 bytes allocated ==40923== ==40923== LEAK SUMMARY: ==40923== definitely lost: 0 bytes in 0 blocks ==40923== indirectly lost: 0 bytes in 0 blocks ==40923== possibly lost: 0 bytes in 0 blocks ==40923== still reachable: 56 bytes in 3 blocks ==40923== suppressed: 637,929 bytes in 8,471 blocks ==40923== Reachable blocks (those to which a pointer was found) are not shown. ==40923== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40923== ==40923== For lists of detected and suppressed errors, rerun with: -s ==40923== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)