==40879== Memcheck, a memory error detector ==40879== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40879== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40879== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==40879== Parent PID: 24077 ==40879== ==40879== ==40879== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40879== Open file descriptor 12: ==40879== at 0x125EF0ED: pipe (pipe.c:29) ==40879== by 0x1B3F207D: ??? ==40879== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40879== by 0x11EF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40879== by 0x11E90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40879== by 0x6210D38: PetscInitialize (pinit.c:924) ==40879== by 0x11DB6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40879== by 0x11DB6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40879== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40879== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40879== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40879== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40879== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40879== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40879== ==40879== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40879== at 0x125F3A8C: __open_nocancel (open64_nocancel.c:39) ==40879== by 0x12577BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40879== by 0x11DEE822: ??? ==40879== by 0x11DEE96F: ??? ==40879== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40879== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40879== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40879== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40879== by 0x11EF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40879== by 0x11E90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40879== by 0x6210D38: PetscInitialize (pinit.c:924) ==40879== by 0x11DB6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40879== by 0x11DB6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40879== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40879== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40879== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40879== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40879== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40879== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40879== ==40879== Open file descriptor 145: ==40879== ==40879== ==40879== Open file descriptor 142: ==40879== ==40879== ==40879== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==40879== ==40879== ==40879== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40879== ==40879== ==40879== ==40879== HEAP SUMMARY: ==40879== in use at exit: 618,366 bytes in 8,236 blocks ==40879== total heap usage: 16,194,213 allocs, 16,185,977 frees, 2,837,218,516 bytes allocated ==40879== ==40879== LEAK SUMMARY: ==40879== definitely lost: 0 bytes in 0 blocks ==40879== indirectly lost: 0 bytes in 0 blocks ==40879== possibly lost: 0 bytes in 0 blocks ==40879== still reachable: 56 bytes in 3 blocks ==40879== suppressed: 618,310 bytes in 8,233 blocks ==40879== Reachable blocks (those to which a pointer was found) are not shown. ==40879== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40879== ==40879== For lists of detected and suppressed errors, rerun with: -s ==40879== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)