==26456== Memcheck, a memory error detector ==26456== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26456== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26456== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26456== Parent PID: 24700 ==26456== ==26456== ==26456== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26456== Open file descriptor 12: ==26456== at 0xDBC30ED: pipe (pipe.c:29) ==26456== by 0x1973107D: ??? ==26456== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26456== by 0xFE6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26456== by 0xFE06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26456== by 0xFFB4D38: PetscInitialize (pinit.c:924) ==26456== by 0xD7C6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26456== by 0xD7C6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26456== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26456== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26456== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26456== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26456== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26456== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26456== ==26456== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26456== at 0xDBC7A8C: __open_nocancel (open64_nocancel.c:39) ==26456== by 0xDB4BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26456== by 0xD7FE822: ??? ==26456== by 0xD7FE96F: ??? ==26456== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26456== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26456== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26456== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26456== by 0xFE6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26456== by 0xFE06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26456== by 0xFFB4D38: PetscInitialize (pinit.c:924) ==26456== by 0xD7C6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26456== by 0xD7C6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26456== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26456== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26456== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26456== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26456== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26456== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26456== ==26456== Open file descriptor 145: ==26456== ==26456== ==26456== Open file descriptor 142: ==26456== ==26456== ==26456== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26456== ==26456== ==26456== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26456== ==26456== ==26456== ==26456== HEAP SUMMARY: ==26456== in use at exit: 618,391 bytes in 8,239 blocks ==26456== total heap usage: 58,403 allocs, 50,164 frees, 1,339,653,734 bytes allocated ==26456== ==26456== LEAK SUMMARY: ==26456== definitely lost: 0 bytes in 0 blocks ==26456== indirectly lost: 0 bytes in 0 blocks ==26456== possibly lost: 0 bytes in 0 blocks ==26456== still reachable: 24 bytes in 2 blocks ==26456== suppressed: 618,367 bytes in 8,237 blocks ==26456== Reachable blocks (those to which a pointer was found) are not shown. ==26456== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26456== ==26456== For lists of detected and suppressed errors, rerun with: -s ==26456== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)