==25938== Memcheck, a memory error detector ==25938== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25938== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25938== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellwiseDataGradient -malloc_debug -malloc_dump -memory_info ==25938== Parent PID: 23992 ==25938== ==25938== ==25938== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25938== Open file descriptor 12: ==25938== at 0xF8780ED: pipe (pipe.c:29) ==25938== by 0x1973507D: ??? ==25938== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25938== by 0x10170418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25938== by 0x10109D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25938== by 0x102F9D38: PetscInitialize (pinit.c:924) ==25938== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25938== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25938== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25938== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25938== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25938== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25938== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25938== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) ==25938== ==25938== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25938== at 0xF87CA8C: __open_nocancel (open64_nocancel.c:39) ==25938== by 0xF800BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25938== by 0xF1B5822: ??? ==25938== by 0xF1B596F: ??? ==25938== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25938== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25938== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25938== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25938== by 0x10170418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25938== by 0x10109D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25938== by 0x102F9D38: PetscInitialize (pinit.c:924) ==25938== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25938== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25938== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25938== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25938== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25938== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25938== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25938== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) ==25938== ==25938== Open file descriptor 145: ==25938== ==25938== ==25938== Open file descriptor 142: ==25938== ==25938== ==25938== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellwiseDataGradient_valgrind.txt ==25938== ==25938== ==25938== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25938== ==25938== ==25938== ==25938== HEAP SUMMARY: ==25938== in use at exit: 618,439 bytes in 8,240 blocks ==25938== total heap usage: 425,075 allocs, 416,835 frees, 1,354,505,854 bytes allocated ==25938== ==25938== LEAK SUMMARY: ==25938== definitely lost: 0 bytes in 0 blocks ==25938== indirectly lost: 0 bytes in 0 blocks ==25938== possibly lost: 0 bytes in 0 blocks ==25938== still reachable: 56 bytes in 3 blocks ==25938== suppressed: 618,383 bytes in 8,237 blocks ==25938== Reachable blocks (those to which a pointer was found) are not shown. ==25938== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25938== ==25938== For lists of detected and suppressed errors, rerun with: -s ==25938== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)