==24268== Memcheck, a memory error detector ==24268== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==24268== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==24268== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==24268== Parent PID: 23992 ==24268== ==24268== Warning: invalid file descriptor -1 in syscall close() ==24268== ==24268== FILE DESCRIPTORS: 9 open (3 std) at exit. ==24268== Open file descriptor 12: ==24268== at 0x65A20ED: pipe (pipe.c:29) ==24268== by 0xAF3007D: ??? ==24268== by 0x8F4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==24268== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24268== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24268== by 0x49C3D38: PetscInitialize (pinit.c:924) ==24268== by 0x60D3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==24268== by 0x60D3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==24268== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==24268== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==24268== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==24268== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==24268== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==24268== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==24268== ==24268== Open file descriptor 8: /dev/shm/open_mpi.0000 ==24268== at 0x65A6A8C: __open_nocancel (open64_nocancel.c:39) ==24268== by 0x652ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==24268== by 0x5C52822: ??? ==24268== by 0x5C5296F: ??? ==24268== by 0x8FF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24268== by 0x8FF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24268== by 0x8FA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24268== by 0x8F4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==24268== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24268== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24268== by 0x49C3D38: PetscInitialize (pinit.c:924) ==24268== by 0x60D3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==24268== by 0x60D3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==24268== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==24268== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==24268== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==24268== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==24268== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==24268== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==24268== ==24268== Open file descriptor 145: ==24268== ==24268== ==24268== Open file descriptor 142: ==24268== ==24268== ==24268== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==24268== ==24268== ==24268== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==24268== ==24268== ==24268== ==24268== HEAP SUMMARY: ==24268== in use at exit: 618,439 bytes in 8,249 blocks ==24268== total heap usage: 114,816 allocs, 106,567 frees, 1,413,003,691 bytes allocated ==24268== ==24268== LEAK SUMMARY: ==24268== definitely lost: 0 bytes in 0 blocks ==24268== indirectly lost: 0 bytes in 0 blocks ==24268== possibly lost: 0 bytes in 0 blocks ==24268== still reachable: 24 bytes in 2 blocks ==24268== suppressed: 618,415 bytes in 8,247 blocks ==24268== Reachable blocks (those to which a pointer was found) are not shown. ==24268== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==24268== ==24268== For lists of detected and suppressed errors, rerun with: -s ==24268== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 101 from 38)