==26059== Memcheck, a memory error detector ==26059== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26059== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26059== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26059== Parent PID: 23992 ==26059== ==26059== ==26059== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26059== Open file descriptor 12: ==26059== at 0xF94B0ED: pipe (pipe.c:29) ==26059== by 0x1973507D: ??? ==26059== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26059== by 0x101B4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26059== by 0x1014DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26059== by 0x102F9D38: PetscInitialize (pinit.c:924) ==26059== by 0xF207E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26059== by 0xF207EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26059== by 0x2E35E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26059== by 0x2DA0D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26059== by 0x2DE936: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26059== by 0x2DE7D6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26059== by 0x2DEE6D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26059== by 0x2D84F5: main (TestNodeBasedCellPopulation.cpp:19) ==26059== ==26059== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26059== at 0xF94FA8C: __open_nocancel (open64_nocancel.c:39) ==26059== by 0xF8D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26059== by 0xF244822: ??? ==26059== by 0xF24496F: ??? ==26059== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26059== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26059== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26059== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26059== by 0x101B4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26059== by 0x1014DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26059== by 0x102F9D38: PetscInitialize (pinit.c:924) ==26059== by 0xF207E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26059== by 0xF207EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26059== by 0x2E35E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26059== by 0x2DA0D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26059== by 0x2DE936: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26059== by 0x2DE7D6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26059== by 0x2DEE6D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26059== by 0x2D84F5: main (TestNodeBasedCellPopulation.cpp:19) ==26059== ==26059== Open file descriptor 145: ==26059== ==26059== ==26059== Open file descriptor 142: ==26059== ==26059== ==26059== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==26059== ==26059== ==26059== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26059== ==26059== ==26059== ==26059== HEAP SUMMARY: ==26059== in use at exit: 618,366 bytes in 8,236 blocks ==26059== total heap usage: 30,290,685 allocs, 30,282,449 frees, 3,165,103,394 bytes allocated ==26059== ==26059== LEAK SUMMARY: ==26059== definitely lost: 0 bytes in 0 blocks ==26059== indirectly lost: 0 bytes in 0 blocks ==26059== possibly lost: 0 bytes in 0 blocks ==26059== still reachable: 56 bytes in 3 blocks ==26059== suppressed: 618,310 bytes in 8,233 blocks ==26059== Reachable blocks (those to which a pointer was found) are not shown. ==26059== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26059== ==26059== For lists of detected and suppressed errors, rerun with: -s ==26059== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)