==26449== Memcheck, a memory error detector ==26449== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26449== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26449== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==26449== Parent PID: 23992 ==26449== ==26449== ==26449== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26449== Open file descriptor 12: ==26449== at 0xF9A30ED: pipe (pipe.c:29) ==26449== by 0x1973307D: ??? ==26449== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26449== by 0x1029B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26449== by 0x10234D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26449== by 0x103E0D38: PetscInitialize (pinit.c:924) ==26449== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26449== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26449== by 0x311572: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26449== by 0x307B19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26449== by 0x30BF20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26449== by 0x30BDC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26449== by 0x30C457: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26449== by 0x305F35: main (TestOffLatticeSimulation.cpp:19) ==26449== ==26449== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26449== at 0xF9A7A8C: __open_nocancel (open64_nocancel.c:39) ==26449== by 0xF92BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26449== by 0xF1B5822: ??? ==26449== by 0xF1B596F: ??? ==26449== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26449== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26449== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26449== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26449== by 0x1029B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26449== by 0x10234D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26449== by 0x103E0D38: PetscInitialize (pinit.c:924) ==26449== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26449== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26449== by 0x311572: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26449== by 0x307B19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26449== by 0x30BF20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26449== by 0x30BDC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26449== by 0x30C457: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26449== by 0x305F35: main (TestOffLatticeSimulation.cpp:19) ==26449== ==26449== Open file descriptor 145: ==26449== ==26449== ==26449== Open file descriptor 142: ==26449== ==26449== ==26449== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==26449== ==26449== ==26449== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26449== ==26449== ==26449== ==26449== HEAP SUMMARY: ==26449== in use at exit: 618,366 bytes in 8,236 blocks ==26449== total heap usage: 12,094,037 allocs, 12,085,801 frees, 3,801,078,768 bytes allocated ==26449== ==26449== LEAK SUMMARY: ==26449== definitely lost: 0 bytes in 0 blocks ==26449== indirectly lost: 0 bytes in 0 blocks ==26449== possibly lost: 0 bytes in 0 blocks ==26449== still reachable: 56 bytes in 3 blocks ==26449== suppressed: 618,310 bytes in 8,233 blocks ==26449== Reachable blocks (those to which a pointer was found) are not shown. ==26449== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26449== ==26449== For lists of detected and suppressed errors, rerun with: -s ==26449== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)