==25814== Memcheck, a memory error detector ==25814== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25814== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25814== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==25814== Parent PID: 23964 ==25814== ==25814== ==25814== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25814== Open file descriptor 12: ==25814== at 0xF0070ED: pipe (pipe.c:29) ==25814== by 0x1973207D: ??? ==25814== by 0x13CD04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25814== by 0xEC54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25814== by 0xEBEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25814== by 0xD8E4D38: PetscInitialize (pinit.c:924) ==25814== by 0xD753E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25814== by 0xD753EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25814== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25814== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25814== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25814== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25814== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25814== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25814== ==25814== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25814== at 0xF00BA8C: __open_nocancel (open64_nocancel.c:39) ==25814== by 0xEF8FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25814== by 0xD790822: ??? ==25814== by 0xD79096F: ??? ==25814== by 0x13D756DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25814== by 0x13D75938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25814== by 0x13D2B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25814== by 0x13CD02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25814== by 0xEC54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25814== by 0xEBEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25814== by 0xD8E4D38: PetscInitialize (pinit.c:924) ==25814== by 0xD753E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25814== by 0xD753EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25814== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25814== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25814== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25814== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25814== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25814== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25814== ==25814== Open file descriptor 145: ==25814== ==25814== ==25814== Open file descriptor 142: ==25814== ==25814== ==25814== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==25814== ==25814== ==25814== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25814== ==25814== ==25814== ==25814== HEAP SUMMARY: ==25814== in use at exit: 618,407 bytes in 8,239 blocks ==25814== total heap usage: 166,094 allocs, 157,855 frees, 1,349,977,755 bytes allocated ==25814== ==25814== LEAK SUMMARY: ==25814== definitely lost: 0 bytes in 0 blocks ==25814== indirectly lost: 0 bytes in 0 blocks ==25814== possibly lost: 0 bytes in 0 blocks ==25814== still reachable: 24 bytes in 2 blocks ==25814== suppressed: 618,383 bytes in 8,237 blocks ==25814== Reachable blocks (those to which a pointer was found) are not shown. ==25814== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25814== ==25814== For lists of detected and suppressed errors, rerun with: -s ==25814== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)