==39984== Memcheck, a memory error detector ==39984== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39984== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39984== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info ==39984== Parent PID: 24065 ==39984== ==39984== ==39984== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39984== Open file descriptor 12: ==39984== at 0x1109A0ED: pipe (pipe.c:29) ==39984== by 0x1973307D: ??? ==39984== by 0x14D344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39984== by 0x10C00418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39984== by 0x10B99D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39984== by 0xF890D38: PetscInitialize (pinit.c:924) ==39984== by 0xF3BAE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39984== by 0xF3BAEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39984== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39984== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39984== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39984== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39984== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39984== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==39984== ==39984== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39984== at 0x1109EA8C: __open_nocancel (open64_nocancel.c:39) ==39984== by 0x11022BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39984== by 0xF3F7822: ??? ==39984== by 0xF3F796F: ??? ==39984== by 0x14DD96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39984== by 0x14DD9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39984== by 0x14D8F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39984== by 0x14D342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39984== by 0x10C00418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39984== by 0x10B99D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39984== by 0xF890D38: PetscInitialize (pinit.c:924) ==39984== by 0xF3BAE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39984== by 0xF3BAEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39984== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39984== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39984== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39984== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39984== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39984== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==39984== ==39984== Open file descriptor 145: ==39984== ==39984== ==39984== Open file descriptor 142: ==39984== ==39984== ==39984== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt ==39984== ==39984== ==39984== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39984== ==39984== ==39984== ==39984== HEAP SUMMARY: ==39984== in use at exit: 638,001 bytes in 8,474 blocks ==39984== total heap usage: 3,818,015 allocs, 3,809,541 frees, 1,511,001,067 bytes allocated ==39984== ==39984== LEAK SUMMARY: ==39984== definitely lost: 0 bytes in 0 blocks ==39984== indirectly lost: 0 bytes in 0 blocks ==39984== possibly lost: 0 bytes in 0 blocks ==39984== still reachable: 56 bytes in 3 blocks ==39984== suppressed: 637,945 bytes in 8,471 blocks ==39984== Reachable blocks (those to which a pointer was found) are not shown. ==39984== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39984== ==39984== For lists of detected and suppressed errors, rerun with: -s ==39984== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)