==41337== Memcheck, a memory error detector ==41337== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41337== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41337== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info ==41337== Parent PID: 24065 ==41337== ==41337== ==41337== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41337== Open file descriptor 12: ==41337== at 0xA9C10ED: pipe (pipe.c:29) ==41337== by 0x1436307D: ??? ==41337== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41337== by 0xA2C9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41337== by 0xA262D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41337== by 0xB133D38: PetscInitialize (pinit.c:924) ==41337== by 0xA16EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41337== by 0xA16EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41337== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41337== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41337== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41337== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41337== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41337== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) ==41337== ==41337== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41337== at 0xA9C5A8C: __open_nocancel (open64_nocancel.c:39) ==41337== by 0xA949BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41337== by 0xA1AB822: ??? ==41337== by 0xA1AB96F: ??? ==41337== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41337== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41337== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41337== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41337== by 0xA2C9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41337== by 0xA262D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41337== by 0xB133D38: PetscInitialize (pinit.c:924) ==41337== by 0xA16EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41337== by 0xA16EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41337== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41337== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41337== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41337== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41337== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41337== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) ==41337== ==41337== Open file descriptor 145: ==41337== ==41337== ==41337== Open file descriptor 142: ==41337== ==41337== ==41337== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt ==41337== ==41337== ==41337== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41337== ==41337== ==41337== ==41337== HEAP SUMMARY: ==41337== in use at exit: 638,465 bytes in 8,483 blocks ==41337== total heap usage: 2,373,473 allocs, 2,364,990 frees, 2,469,788,839 bytes allocated ==41337== ==41337== LEAK SUMMARY: ==41337== definitely lost: 0 bytes in 0 blocks ==41337== indirectly lost: 0 bytes in 0 blocks ==41337== possibly lost: 0 bytes in 0 blocks ==41337== still reachable: 24 bytes in 2 blocks ==41337== suppressed: 638,441 bytes in 8,481 blocks ==41337== Reachable blocks (those to which a pointer was found) are not shown. ==41337== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41337== ==41337== For lists of detected and suppressed errors, rerun with: -s ==41337== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 31)