==40403== Memcheck, a memory error detector ==40403== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40403== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40403== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info ==40403== Parent PID: 24065 ==40403== ==40403== ==40403== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40403== Open file descriptor 12: ==40403== at 0xF4100ED: pipe (pipe.c:29) ==40403== by 0x1B3F607D: ??? ==40403== by 0x144274CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40403== by 0x11B5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40403== by 0x11AF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40403== by 0x11CA0D38: PetscInitialize (pinit.c:924) ==40403== by 0xF078E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40403== by 0xF078EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40403== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40403== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40403== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40403== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40403== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40403== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40403== ==40403== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40403== at 0xF414A8C: __open_nocancel (open64_nocancel.c:39) ==40403== by 0xF398BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40403== by 0x6121822: ??? ==40403== by 0x612196F: ??? ==40403== by 0x144CC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40403== by 0x144CC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40403== by 0x14482922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40403== by 0x144272DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40403== by 0x11B5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40403== by 0x11AF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40403== by 0x11CA0D38: PetscInitialize (pinit.c:924) ==40403== by 0xF078E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40403== by 0xF078EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40403== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40403== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40403== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40403== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40403== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40403== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40403== ==40403== Open file descriptor 145: ==40403== ==40403== ==40403== Open file descriptor 142: ==40403== ==40403== ==40403== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt ==40403== ==40403== ==40403== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40403== ==40403== ==40403== ==40403== HEAP SUMMARY: ==40403== in use at exit: 638,090 bytes in 8,478 blocks ==40403== total heap usage: 67,350 allocs, 58,872 frees, 1,341,874,574 bytes allocated ==40403== ==40403== LEAK SUMMARY: ==40403== definitely lost: 0 bytes in 0 blocks ==40403== indirectly lost: 0 bytes in 0 blocks ==40403== possibly lost: 0 bytes in 0 blocks ==40403== still reachable: 56 bytes in 3 blocks ==40403== suppressed: 638,034 bytes in 8,475 blocks ==40403== Reachable blocks (those to which a pointer was found) are not shown. ==40403== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40403== ==40403== For lists of detected and suppressed errors, rerun with: -s ==40403== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)