==41045== Memcheck, a memory error detector ==41045== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41045== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41045== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==41045== Parent PID: 24038 ==41045== ==41045== ==41045== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41045== Open file descriptor 12: ==41045== at 0x128730ED: pipe (pipe.c:29) ==41045== by 0x1B3F407D: ??? ==41045== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41045== by 0x1217B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41045== by 0x12114D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41045== by 0x6277D38: PetscInitialize (pinit.c:924) ==41045== by 0x1205DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41045== by 0x1205DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41045== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41045== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41045== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41045== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41045== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41045== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==41045== ==41045== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41045== at 0x12877A8C: __open_nocancel (open64_nocancel.c:39) ==41045== by 0x127FBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41045== by 0x6121822: ??? ==41045== by 0x612196F: ??? ==41045== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41045== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41045== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41045== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41045== by 0x1217B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41045== by 0x12114D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41045== by 0x6277D38: PetscInitialize (pinit.c:924) ==41045== by 0x1205DE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41045== by 0x1205DEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41045== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41045== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41045== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41045== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41045== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41045== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==41045== ==41045== Open file descriptor 145: ==41045== ==41045== ==41045== Open file descriptor 142: ==41045== ==41045== ==41045== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt ==41045== ==41045== ==41045== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41045== ==41045== ==41045== ==41045== HEAP SUMMARY: ==41045== in use at exit: 618,423 bytes in 8,239 blocks ==41045== total heap usage: 520,406 allocs, 512,167 frees, 1,547,504,261 bytes allocated ==41045== ==41045== LEAK SUMMARY: ==41045== definitely lost: 0 bytes in 0 blocks ==41045== indirectly lost: 0 bytes in 0 blocks ==41045== possibly lost: 0 bytes in 0 blocks ==41045== still reachable: 24 bytes in 2 blocks ==41045== suppressed: 618,399 bytes in 8,237 blocks ==41045== Reachable blocks (those to which a pointer was found) are not shown. ==41045== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41045== ==41045== For lists of detected and suppressed errors, rerun with: -s ==41045== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)