==25963== Memcheck, a memory error detector ==25963== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25963== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25963== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==25963== Parent PID: 24120 ==25963== ==25963== ==25963== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25963== Open file descriptor 12: ==25963== at 0xDBC30ED: pipe (pipe.c:29) ==25963== by 0x1973307D: ??? ==25963== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25963== by 0xFE6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25963== by 0xFE06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25963== by 0xFFB4D38: PetscInitialize (pinit.c:924) ==25963== by 0xD7C6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25963== by 0xD7C6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25963== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25963== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25963== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25963== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25963== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25963== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25963== ==25963== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25963== at 0xDBC7A8C: __open_nocancel (open64_nocancel.c:39) ==25963== by 0xDB4BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25963== by 0xD803822: ??? ==25963== by 0xD80396F: ??? ==25963== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25963== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25963== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25963== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25963== by 0xFE6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25963== by 0xFE06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25963== by 0xFFB4D38: PetscInitialize (pinit.c:924) ==25963== by 0xD7C6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25963== by 0xD7C6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25963== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25963== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25963== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25963== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25963== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25963== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25963== ==25963== Open file descriptor 145: ==25963== ==25963== ==25963== Open file descriptor 142: ==25963== ==25963== ==25963== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==25963== ==25963== ==25963== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25963== ==25963== ==25963== ==25963== HEAP SUMMARY: ==25963== in use at exit: 618,407 bytes in 8,239 blocks ==25963== total heap usage: 58,404 allocs, 50,165 frees, 1,339,653,885 bytes allocated ==25963== ==25963== LEAK SUMMARY: ==25963== definitely lost: 0 bytes in 0 blocks ==25963== indirectly lost: 0 bytes in 0 blocks ==25963== possibly lost: 0 bytes in 0 blocks ==25963== still reachable: 24 bytes in 2 blocks ==25963== suppressed: 618,383 bytes in 8,237 blocks ==25963== Reachable blocks (those to which a pointer was found) are not shown. ==25963== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25963== ==25963== For lists of detected and suppressed errors, rerun with: -s ==25963== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)