==26851== Memcheck, a memory error detector ==26851== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26851== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26851== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info ==26851== Parent PID: 24154 ==26851== ==26851== ==26851== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26851== Open file descriptor 12: ==26851== at 0xF8BA0ED: pipe (pipe.c:29) ==26851== by 0x1973507D: ??? ==26851== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26851== by 0x101B4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26851== by 0x1014DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26851== by 0x102F9D38: PetscInitialize (pinit.c:924) ==26851== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26851== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26851== by 0x2CC5F8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26851== by 0x2C3ADF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26851== by 0x2C7EF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26851== by 0x2C7DF3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26851== by 0x2C8407: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26851== by 0x2C22D5: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==26851== ==26851== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26851== at 0xF8BEA8C: __open_nocancel (open64_nocancel.c:39) ==26851== by 0xF842BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26851== by 0xF1B5822: ??? ==26851== by 0xF1B596F: ??? ==26851== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26851== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26851== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26851== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26851== by 0x101B4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26851== by 0x1014DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26851== by 0x102F9D38: PetscInitialize (pinit.c:924) ==26851== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26851== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26851== by 0x2CC5F8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26851== by 0x2C3ADF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26851== by 0x2C7EF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26851== by 0x2C7DF3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26851== by 0x2C8407: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26851== by 0x2C22D5: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==26851== ==26851== Open file descriptor 145: ==26851== ==26851== ==26851== Open file descriptor 142: ==26851== ==26851== ==26851== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt ==26851== ==26851== ==26851== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26851== ==26851== ==26851== ==26851== HEAP SUMMARY: ==26851== in use at exit: 618,439 bytes in 8,240 blocks ==26851== total heap usage: 57,264 allocs, 49,024 frees, 1,340,570,258 bytes allocated ==26851== ==26851== LEAK SUMMARY: ==26851== definitely lost: 0 bytes in 0 blocks ==26851== indirectly lost: 0 bytes in 0 blocks ==26851== possibly lost: 0 bytes in 0 blocks ==26851== still reachable: 56 bytes in 3 blocks ==26851== suppressed: 618,383 bytes in 8,237 blocks ==26851== Reachable blocks (those to which a pointer was found) are not shown. ==26851== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26851== ==26851== For lists of detected and suppressed errors, rerun with: -s ==26851== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)