==39977== Memcheck, a memory error detector ==39977== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39977== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39977== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39977== Parent PID: 24089 ==39977== ==39977== ==39977== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39977== Open file descriptor 12: ==39977== at 0xF8780ED: pipe (pipe.c:29) ==39977== by 0x1973507D: ??? ==39977== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39977== by 0x10170418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39977== by 0x10109D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39977== by 0x102F9D38: PetscInitialize (pinit.c:924) ==39977== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39977== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39977== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39977== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39977== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39977== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39977== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39977== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39977== ==39977== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39977== at 0xF87CA8C: __open_nocancel (open64_nocancel.c:39) ==39977== by 0xF800BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39977== by 0xF1B5822: ??? ==39977== by 0xF1B596F: ??? ==39977== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39977== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39977== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39977== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39977== by 0x10170418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39977== by 0x10109D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39977== by 0x102F9D38: PetscInitialize (pinit.c:924) ==39977== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39977== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39977== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39977== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39977== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39977== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39977== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39977== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39977== ==39977== Open file descriptor 145: ==39977== ==39977== ==39977== Open file descriptor 142: ==39977== ==39977== ==39977== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==39977== ==39977== ==39977== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39977== ==39977== ==39977== ==39977== HEAP SUMMARY: ==39977== in use at exit: 618,366 bytes in 8,236 blocks ==39977== total heap usage: 5,223,405 allocs, 5,215,169 frees, 1,780,282,027 bytes allocated ==39977== ==39977== LEAK SUMMARY: ==39977== definitely lost: 0 bytes in 0 blocks ==39977== indirectly lost: 0 bytes in 0 blocks ==39977== possibly lost: 0 bytes in 0 blocks ==39977== still reachable: 56 bytes in 3 blocks ==39977== suppressed: 618,310 bytes in 8,233 blocks ==39977== Reachable blocks (those to which a pointer was found) are not shown. ==39977== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39977== ==39977== For lists of detected and suppressed errors, rerun with: -s ==39977== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)