==40318== Memcheck, a memory error detector ==40318== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40318== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40318== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40318== Parent PID: 24023 ==40318== ==40318== ==40318== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40318== Open file descriptor 12: ==40318== at 0x109CA0ED: pipe (pipe.c:29) ==40318== by 0x1B3EF07D: ??? ==40318== by 0x1553F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40318== by 0x102D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40318== by 0x1026BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40318== by 0x6277D38: PetscInitialize (pinit.c:924) ==40318== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40318== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40318== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40318== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40318== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40318== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40318== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40318== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40318== ==40318== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40318== at 0x109CEA8C: __open_nocancel (open64_nocancel.c:39) ==40318== by 0x10952BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40318== by 0x611C822: ??? ==40318== by 0x611C96F: ??? ==40318== by 0x155E46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40318== by 0x155E4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40318== by 0x1559A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40318== by 0x1553F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40318== by 0x102D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40318== by 0x1026BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40318== by 0x6277D38: PetscInitialize (pinit.c:924) ==40318== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40318== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40318== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40318== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40318== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40318== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40318== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40318== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40318== ==40318== Open file descriptor 145: ==40318== ==40318== ==40318== Open file descriptor 142: ==40318== ==40318== ==40318== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40318== ==40318== ==40318== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40318== ==40318== ==40318== ==40318== HEAP SUMMARY: ==40318== in use at exit: 638,138 bytes in 8,479 blocks ==40318== total heap usage: 755,255 allocs, 746,776 frees, 1,374,282,362 bytes allocated ==40318== ==40318== LEAK SUMMARY: ==40318== definitely lost: 0 bytes in 0 blocks ==40318== indirectly lost: 0 bytes in 0 blocks ==40318== possibly lost: 0 bytes in 0 blocks ==40318== still reachable: 120 bytes in 4 blocks ==40318== suppressed: 638,018 bytes in 8,475 blocks ==40318== Reachable blocks (those to which a pointer was found) are not shown. ==40318== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40318== ==40318== For lists of detected and suppressed errors, rerun with: -s ==40318== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)