==44639== Memcheck, a memory error detector ==44639== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==44639== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==44639== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==44639== Parent PID: 24330 ==44639== ==44639== ==44639== FILE DESCRIPTORS: 9 open (3 std) at exit. ==44639== Open file descriptor 12: ==44639== at 0xA7FB0FD: pipe (pipe.c:29) ==44639== by 0x1435E07D: ??? ==44639== by 0xD9AB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44639== by 0xABC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44639== by 0xAB60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44639== by 0xB0A4D38: PetscInitialize (pinit.c:924) ==44639== by 0xA0DFE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44639== by 0xA0DFEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44639== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44639== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44639== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44639== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44639== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44639== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==44639== ==44639== Open file descriptor 8: /dev/shm/open_mpi.0000 ==44639== at 0xA7FFA9C: __open_nocancel (open64_nocancel.c:39) ==44639== by 0xA783BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==44639== by 0xA117822: ??? ==44639== by 0xA11796F: ??? ==44639== by 0xDA506DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44639== by 0xDA50938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44639== by 0xDA06922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44639== by 0xD9AB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44639== by 0xABC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44639== by 0xAB60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44639== by 0xB0A4D38: PetscInitialize (pinit.c:924) ==44639== by 0xA0DFE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44639== by 0xA0DFEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44639== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44639== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44639== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44639== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44639== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44639== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==44639== ==44639== Open file descriptor 145: ==44639== ==44639== ==44639== Open file descriptor 142: ==44639== ==44639== ==44639== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==44639== ==44639== ==44639== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==44639== ==44639== ==44639== ==44639== HEAP SUMMARY: ==44639== in use at exit: 35,606 bytes in 295 blocks ==44639== total heap usage: 818,419 allocs, 818,124 frees, 111,970,738 bytes allocated ==44639== ==44639== LEAK SUMMARY: ==44639== definitely lost: 0 bytes in 0 blocks ==44639== indirectly lost: 0 bytes in 0 blocks ==44639== possibly lost: 0 bytes in 0 blocks ==44639== still reachable: 24 bytes in 2 blocks ==44639== suppressed: 35,582 bytes in 293 blocks ==44639== Reachable blocks (those to which a pointer was found) are not shown. ==44639== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==44639== ==44639== For lists of detected and suppressed errors, rerun with: -s ==44639== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 31)