==26388== Memcheck, a memory error detector ==26388== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26388== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26388== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26388== Parent PID: 24330 ==26388== ==26388== ==26388== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26388== Open file descriptor 12: ==26388== at 0xDBC30FD: pipe (pipe.c:29) ==26388== by 0x1972E07D: ??? ==26388== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26388== by 0xFE6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26388== by 0xFE06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26388== by 0xFFB4D38: PetscInitialize (pinit.c:924) ==26388== by 0xD7C6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26388== by 0xD7C6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26388== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26388== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26388== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26388== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26388== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26388== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26388== ==26388== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26388== at 0xDBC7A9C: __open_nocancel (open64_nocancel.c:39) ==26388== by 0xDB4BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26388== by 0xD7FE822: ??? ==26388== by 0xD7FE96F: ??? ==26388== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26388== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26388== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26388== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26388== by 0xFE6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26388== by 0xFE06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26388== by 0xFFB4D38: PetscInitialize (pinit.c:924) ==26388== by 0xD7C6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26388== by 0xD7C6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26388== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26388== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26388== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26388== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26388== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26388== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26388== ==26388== Open file descriptor 145: ==26388== ==26388== ==26388== Open file descriptor 142: ==26388== ==26388== ==26388== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26388== ==26388== ==26388== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26388== ==26388== ==26388== ==26388== HEAP SUMMARY: ==26388== in use at exit: 35,183 bytes in 289 blocks ==26388== total heap usage: 42,502 allocs, 42,213 frees, 8,264,226 bytes allocated ==26388== ==26388== LEAK SUMMARY: ==26388== definitely lost: 0 bytes in 0 blocks ==26388== indirectly lost: 0 bytes in 0 blocks ==26388== possibly lost: 0 bytes in 0 blocks ==26388== still reachable: 24 bytes in 2 blocks ==26388== suppressed: 35,159 bytes in 287 blocks ==26388== Reachable blocks (those to which a pointer was found) are not shown. ==26388== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26388== ==26388== For lists of detected and suppressed errors, rerun with: -s ==26388== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)