==40528== Memcheck, a memory error detector ==40528== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40528== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40528== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40528== Parent PID: 24301 ==40528== ==40528== ==40528== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40528== Open file descriptor 12: ==40528== at 0x10D2F0FD: pipe (pipe.c:29) ==40528== by 0x1972E07D: ??? ==40528== by 0x14CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40528== by 0x1097C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40528== by 0x10915D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40528== by 0xF60CD38: PetscInitialize (pinit.c:924) ==40528== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40528== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40528== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40528== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40528== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40528== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40528== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40528== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40528== ==40528== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40528== at 0x10D33A9C: __open_nocancel (open64_nocancel.c:39) ==40528== by 0x10CB7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40528== by 0xF1B0822: ??? ==40528== by 0xF1B096F: ??? ==40528== by 0x14D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40528== by 0x14D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40528== by 0x14D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40528== by 0x14CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40528== by 0x1097C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40528== by 0x10915D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40528== by 0xF60CD38: PetscInitialize (pinit.c:924) ==40528== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40528== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40528== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40528== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40528== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40528== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40528== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40528== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40528== ==40528== Open file descriptor 145: ==40528== ==40528== ==40528== Open file descriptor 142: ==40528== ==40528== ==40528== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==40528== ==40528== ==40528== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40528== ==40528== ==40528== ==40528== HEAP SUMMARY: ==40528== in use at exit: 15,371 bytes in 47 blocks ==40528== total heap usage: 3,485,027 allocs, 3,484,980 frees, 937,954,820 bytes allocated ==40528== ==40528== LEAK SUMMARY: ==40528== definitely lost: 0 bytes in 0 blocks ==40528== indirectly lost: 0 bytes in 0 blocks ==40528== possibly lost: 0 bytes in 0 blocks ==40528== still reachable: 56 bytes in 3 blocks ==40528== suppressed: 15,315 bytes in 44 blocks ==40528== Reachable blocks (those to which a pointer was found) are not shown. ==40528== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40528== ==40528== For lists of detected and suppressed errors, rerun with: -s ==40528== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 29 from 29)