==27081== Memcheck, a memory error detector ==27081== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27081== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27081== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==27081== Parent PID: 24382 ==27081== ==27081== ==27081== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27081== Open file descriptor 12: ==27081== at 0xF95F0FD: pipe (pipe.c:29) ==27081== by 0x1972E07D: ??? ==27081== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27081== by 0x10259418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27081== by 0x101F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27081== by 0x103E0D38: PetscInitialize (pinit.c:924) ==27081== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27081== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27081== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27081== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27081== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27081== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27081== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27081== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==27081== ==27081== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27081== at 0xF963A9C: __open_nocancel (open64_nocancel.c:39) ==27081== by 0xF8E7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27081== by 0xF1B0822: ??? ==27081== by 0xF1B096F: ??? ==27081== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27081== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27081== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27081== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27081== by 0x10259418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27081== by 0x101F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27081== by 0x103E0D38: PetscInitialize (pinit.c:924) ==27081== by 0xF178E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27081== by 0xF178EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27081== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27081== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27081== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27081== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27081== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27081== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==27081== ==27081== Open file descriptor 145: ==27081== ==27081== ==27081== Open file descriptor 142: ==27081== ==27081== ==27081== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==27081== ==27081== ==27081== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27081== ==27081== ==27081== ==27081== HEAP SUMMARY: ==27081== in use at exit: 15,371 bytes in 47 blocks ==27081== total heap usage: 7,110,538 allocs, 7,110,491 frees, 7,707,737,162 bytes allocated ==27081== ==27081== LEAK SUMMARY: ==27081== definitely lost: 0 bytes in 0 blocks ==27081== indirectly lost: 0 bytes in 0 blocks ==27081== possibly lost: 0 bytes in 0 blocks ==27081== still reachable: 56 bytes in 3 blocks ==27081== suppressed: 15,315 bytes in 44 blocks ==27081== Reachable blocks (those to which a pointer was found) are not shown. ==27081== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27081== ==27081== For lists of detected and suppressed errors, rerun with: -s ==27081== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 29 from 29)