==26196== Memcheck, a memory error detector ==26196== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26196== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26196== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==26196== Parent PID: 24431 ==26196== ==26196== ==26196== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26196== Open file descriptor 12: ==26196== at 0xF00B0FD: pipe (pipe.c:29) ==26196== by 0x1973107D: ??? ==26196== by 0x13CD44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26196== by 0xEC58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26196== by 0xEBF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26196== by 0xD8E8D38: PetscInitialize (pinit.c:924) ==26196== by 0xD75880D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26196== by 0xD75885B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26196== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26196== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26196== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26196== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26196== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26196== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26196== ==26196== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26196== at 0xF00FA9C: __open_nocancel (open64_nocancel.c:39) ==26196== by 0xEF93BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26196== by 0xD78F822: ??? ==26196== by 0xD78F96F: ??? ==26196== by 0x13D796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26196== by 0x13D79938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26196== by 0x13D2F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26196== by 0x13CD42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26196== by 0xEC58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26196== by 0xEBF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26196== by 0xD8E8D38: PetscInitialize (pinit.c:924) ==26196== by 0xD75880D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26196== by 0xD75885B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26196== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26196== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26196== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26196== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26196== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26196== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26196== ==26196== Open file descriptor 145: ==26196== ==26196== ==26196== Open file descriptor 142: ==26196== ==26196== ==26196== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==26196== ==26196== ==26196== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26196== ==26196== ==26196== ==26196== HEAP SUMMARY: ==26196== in use at exit: 15,412 bytes in 50 blocks ==26196== total heap usage: 149,659 allocs, 149,609 frees, 17,423,213 bytes allocated ==26196== ==26196== LEAK SUMMARY: ==26196== definitely lost: 0 bytes in 0 blocks ==26196== indirectly lost: 0 bytes in 0 blocks ==26196== possibly lost: 0 bytes in 0 blocks ==26196== still reachable: 24 bytes in 2 blocks ==26196== suppressed: 15,388 bytes in 48 blocks ==26196== Reachable blocks (those to which a pointer was found) are not shown. ==26196== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26196== ==26196== For lists of detected and suppressed errors, rerun with: -s ==26196== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)