==40830== Memcheck, a memory error detector ==40830== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40830== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40830== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40830== Parent PID: 24431 ==40830== ==40830== ==40830== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40830== Open file descriptor 12: ==40830== at 0x112670FD: pipe (pipe.c:29) ==40830== by 0x1B3F407D: ??? ==40830== by 0x144324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40830== by 0x11B5F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40830== by 0x11AF8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40830== by 0x11CA4D38: PetscInitialize (pinit.c:924) ==40830== by 0x10AA280D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40830== by 0x10AA285B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40830== by 0x23B3A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40830== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40830== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40830== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40830== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40830== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40830== ==40830== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40830== at 0x1126BA9C: __open_nocancel (open64_nocancel.c:39) ==40830== by 0x111EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40830== by 0x611C822: ??? ==40830== by 0x611C96F: ??? ==40830== by 0x144D76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40830== by 0x144D7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40830== by 0x1448D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40830== by 0x144322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40830== by 0x11B5F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40830== by 0x11AF8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40830== by 0x11CA4D38: PetscInitialize (pinit.c:924) ==40830== by 0x10AA280D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40830== by 0x10AA285B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40830== by 0x23B3A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40830== by 0x231879: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40830== by 0x235FAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40830== by 0x235E4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40830== by 0x2364E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40830== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40830== ==40830== Open file descriptor 145: ==40830== ==40830== ==40830== Open file descriptor 142: ==40830== ==40830== ==40830== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40830== ==40830== ==40830== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40830== ==40830== ==40830== ==40830== HEAP SUMMARY: ==40830== in use at exit: 15,387 bytes in 47 blocks ==40830== total heap usage: 6,294,367 allocs, 6,294,320 frees, 726,664,236 bytes allocated ==40830== ==40830== LEAK SUMMARY: ==40830== definitely lost: 0 bytes in 0 blocks ==40830== indirectly lost: 0 bytes in 0 blocks ==40830== possibly lost: 0 bytes in 0 blocks ==40830== still reachable: 56 bytes in 3 blocks ==40830== suppressed: 15,331 bytes in 44 blocks ==40830== Reachable blocks (those to which a pointer was found) are not shown. ==40830== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40830== ==40830== For lists of detected and suppressed errors, rerun with: -s ==40830== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 29 from 29)