==40874== Memcheck, a memory error detector ==40874== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40874== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40874== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40874== Parent PID: 24431 ==40874== ==40874== ==40874== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40874== Open file descriptor 12: ==40874== at 0x126350FD: pipe (pipe.c:29) ==40874== by 0x1B3F307D: ??? ==40874== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40874== by 0x11F3D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40874== by 0x11ED6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40874== by 0x6277D38: PetscInitialize (pinit.c:924) ==40874== by 0x11E2080D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40874== by 0x11E2085B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40874== by 0x2244A1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40874== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40874== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40874== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40874== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40874== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40874== ==40874== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40874== at 0x12639A9C: __open_nocancel (open64_nocancel.c:39) ==40874== by 0x125BDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40874== by 0x611C822: ??? ==40874== by 0x611C96F: ??? ==40874== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40874== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40874== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40874== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40874== by 0x11F3D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40874== by 0x11ED6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40874== by 0x6277D38: PetscInitialize (pinit.c:924) ==40874== by 0x11E2080D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40874== by 0x11E2085B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40874== by 0x2244A1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40874== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40874== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40874== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40874== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40874== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40874== ==40874== Open file descriptor 145: ==40874== ==40874== ==40874== Open file descriptor 142: ==40874== ==40874== ==40874== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40874== ==40874== ==40874== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40874== ==40874== ==40874== ==40874== HEAP SUMMARY: ==40874== in use at exit: 15,387 bytes in 47 blocks ==40874== total heap usage: 3,697,502 allocs, 3,697,455 frees, 288,114,767 bytes allocated ==40874== ==40874== LEAK SUMMARY: ==40874== definitely lost: 0 bytes in 0 blocks ==40874== indirectly lost: 0 bytes in 0 blocks ==40874== possibly lost: 0 bytes in 0 blocks ==40874== still reachable: 56 bytes in 3 blocks ==40874== suppressed: 15,331 bytes in 44 blocks ==40874== Reachable blocks (those to which a pointer was found) are not shown. ==40874== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40874== ==40874== For lists of detected and suppressed errors, rerun with: -s ==40874== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 29 from 29)