==40622== Memcheck, a memory error detector ==40622== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40622== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40622== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40622== Parent PID: 24431 ==40622== ==40622== ==40622== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40622== Open file descriptor 12: ==40622== at 0x10C100FD: pipe (pipe.c:29) ==40622== by 0x1B3F307D: ??? ==40622== by 0x155944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40622== by 0x10518418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40622== by 0x104B1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40622== by 0x6277D38: PetscInitialize (pinit.c:924) ==40622== by 0x103FB80D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40622== by 0x103FB85B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40622== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40622== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40622== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40622== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40622== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40622== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40622== ==40622== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40622== at 0x10C14A9C: __open_nocancel (open64_nocancel.c:39) ==40622== by 0x10B98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40622== by 0x611C822: ??? ==40622== by 0x611C96F: ??? ==40622== by 0x156396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40622== by 0x15639938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40622== by 0x155EF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40622== by 0x155942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40622== by 0x10518418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40622== by 0x104B1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40622== by 0x6277D38: PetscInitialize (pinit.c:924) ==40622== by 0x103FB80D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40622== by 0x103FB85B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40622== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40622== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40622== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40622== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40622== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40622== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40622== ==40622== Open file descriptor 145: ==40622== ==40622== ==40622== Open file descriptor 142: ==40622== ==40622== ==40622== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==40622== ==40622== ==40622== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40622== ==40622== ==40622== ==40622== HEAP SUMMARY: ==40622== in use at exit: 15,524 bytes in 52 blocks ==40622== total heap usage: 845,564 allocs, 845,512 frees, 128,693,782 bytes allocated ==40622== ==40622== LEAK SUMMARY: ==40622== definitely lost: 0 bytes in 0 blocks ==40622== indirectly lost: 0 bytes in 0 blocks ==40622== possibly lost: 0 bytes in 0 blocks ==40622== still reachable: 120 bytes in 4 blocks ==40622== suppressed: 15,404 bytes in 48 blocks ==40622== Reachable blocks (those to which a pointer was found) are not shown. ==40622== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40622== ==40622== For lists of detected and suppressed errors, rerun with: -s ==40622== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)