==35613== Memcheck, a memory error detector ==35613== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==35613== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==35613== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==35613== Parent PID: 24431 ==35613== ==35613== ==35613== FILE DESCRIPTORS: 9 open (3 std) at exit. ==35613== Open file descriptor 12: ==35613== at 0xF9A70FD: pipe (pipe.c:29) ==35613== by 0x1973407D: ??? ==35613== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35613== by 0x1029F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35613== by 0x10238D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35613== by 0x103E4D38: PetscInitialize (pinit.c:924) ==35613== by 0xF17D80D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35613== by 0xF17D85B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35613== by 0x1D7694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35613== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35613== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35613== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35613== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35613== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35613== ==35613== Open file descriptor 8: /dev/shm/open_mpi.0000 ==35613== at 0xF9ABA9C: __open_nocancel (open64_nocancel.c:39) ==35613== by 0xF92FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==35613== by 0xF1B4822: ??? ==35613== by 0xF1B496F: ??? ==35613== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35613== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35613== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35613== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35613== by 0x1029F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35613== by 0x10238D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35613== by 0x103E4D38: PetscInitialize (pinit.c:924) ==35613== by 0xF17D80D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35613== by 0xF17D85B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35613== by 0x1D7694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35613== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35613== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35613== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35613== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35613== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35613== ==35613== Open file descriptor 145: ==35613== ==35613== ==35613== Open file descriptor 142: ==35613== ==35613== ==35613== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==35613== ==35613== ==35613== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==35613== ==35613== ==35613== ==35613== HEAP SUMMARY: ==35613== in use at exit: 15,387 bytes in 48 blocks ==35613== total heap usage: 11,666,108 allocs, 11,666,060 frees, 875,971,312 bytes allocated ==35613== ==35613== LEAK SUMMARY: ==35613== definitely lost: 0 bytes in 0 blocks ==35613== indirectly lost: 0 bytes in 0 blocks ==35613== possibly lost: 0 bytes in 0 blocks ==35613== still reachable: 72 bytes in 4 blocks ==35613== suppressed: 15,315 bytes in 44 blocks ==35613== Reachable blocks (those to which a pointer was found) are not shown. ==35613== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==35613== ==35613== For lists of detected and suppressed errors, rerun with: -s ==35613== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 29 from 29)