==40416== Memcheck, a memory error detector ==40416== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40416== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40416== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40416== Parent PID: 24431 ==40416== ==40416== ==40416== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40416== Open file descriptor 12: ==40416== at 0x10D330FD: pipe (pipe.c:29) ==40416== by 0x1973207D: ??? ==40416== by 0x14CE34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40416== by 0x10980418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40416== by 0x10919D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40416== by 0xF610D38: PetscInitialize (pinit.c:924) ==40416== by 0xF17D80D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40416== by 0xF17D85B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40416== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40416== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40416== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40416== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40416== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40416== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40416== ==40416== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40416== at 0x10D37A9C: __open_nocancel (open64_nocancel.c:39) ==40416== by 0x10CBBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40416== by 0xF1B4822: ??? ==40416== by 0xF1B496F: ??? ==40416== by 0x14D8A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40416== by 0x14D8A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40416== by 0x14D40922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40416== by 0x14CE32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40416== by 0x10980418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40416== by 0x10919D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40416== by 0xF610D38: PetscInitialize (pinit.c:924) ==40416== by 0xF17D80D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40416== by 0xF17D85B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40416== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40416== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40416== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40416== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40416== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40416== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40416== ==40416== Open file descriptor 145: ==40416== ==40416== ==40416== Open file descriptor 142: ==40416== ==40416== ==40416== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==40416== ==40416== ==40416== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40416== ==40416== ==40416== ==40416== HEAP SUMMARY: ==40416== in use at exit: 15,371 bytes in 47 blocks ==40416== total heap usage: 3,485,030 allocs, 3,484,983 frees, 937,954,051 bytes allocated ==40416== ==40416== LEAK SUMMARY: ==40416== definitely lost: 0 bytes in 0 blocks ==40416== indirectly lost: 0 bytes in 0 blocks ==40416== possibly lost: 0 bytes in 0 blocks ==40416== still reachable: 56 bytes in 3 blocks ==40416== suppressed: 15,315 bytes in 44 blocks ==40416== Reachable blocks (those to which a pointer was found) are not shown. ==40416== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40416== ==40416== For lists of detected and suppressed errors, rerun with: -s ==40416== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 29 from 29)