==40365== Memcheck, a memory error detector ==40365== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40365== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40365== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40365== Parent PID: 24378 ==40365== ==40365== ==40365== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40365== Open file descriptor 12: ==40365== at 0xF9600FD: pipe (pipe.c:29) ==40365== by 0x1972E07D: ??? ==40365== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40365== by 0x1025A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40365== by 0x101F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40365== by 0x103E1D38: PetscInitialize (pinit.c:924) ==40365== by 0xF179E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40365== by 0xF179EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40365== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40365== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40365== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40365== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40365== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40365== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40365== ==40365== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40365== at 0xF964A9C: __open_nocancel (open64_nocancel.c:39) ==40365== by 0xF8E8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40365== by 0xF1B1822: ??? ==40365== by 0xF1B196F: ??? ==40365== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40365== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40365== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40365== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40365== by 0x1025A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40365== by 0x101F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40365== by 0x103E1D38: PetscInitialize (pinit.c:924) ==40365== by 0xF179E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40365== by 0xF179EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40365== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40365== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40365== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40365== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40365== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40365== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40365== ==40365== Open file descriptor 145: ==40365== ==40365== ==40365== Open file descriptor 142: ==40365== ==40365== ==40365== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40365== ==40365== ==40365== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40365== ==40365== ==40365== ==40365== HEAP SUMMARY: ==40365== in use at exit: 15,444 bytes in 51 blocks ==40365== total heap usage: 709,005 allocs, 708,954 frees, 394,197,555 bytes allocated ==40365== ==40365== LEAK SUMMARY: ==40365== definitely lost: 0 bytes in 0 blocks ==40365== indirectly lost: 0 bytes in 0 blocks ==40365== possibly lost: 0 bytes in 0 blocks ==40365== still reachable: 56 bytes in 3 blocks ==40365== suppressed: 15,388 bytes in 48 blocks ==40365== Reachable blocks (those to which a pointer was found) are not shown. ==40365== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40365== ==40365== For lists of detected and suppressed errors, rerun with: -s ==40365== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)