==40426== Memcheck, a memory error detector ==40426== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40426== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40426== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40426== Parent PID: 24378 ==40426== ==40426== ==40426== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40426== Open file descriptor 12: ==40426== at 0x10E170FD: pipe (pipe.c:29) ==40426== by 0x1972E07D: ??? ==40426== by 0x14CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40426== by 0x1097D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40426== by 0x10916D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40426== by 0xF60DD38: PetscInitialize (pinit.c:924) ==40426== by 0xF179E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40426== by 0xF179EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40426== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40426== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40426== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40426== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40426== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40426== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40426== ==40426== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40426== at 0x10E1BA9C: __open_nocancel (open64_nocancel.c:39) ==40426== by 0x10D9FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40426== by 0xF1B1822: ??? ==40426== by 0xF1B196F: ??? ==40426== by 0x14D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40426== by 0x14D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40426== by 0x14D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40426== by 0x14CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40426== by 0x1097D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40426== by 0x10916D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40426== by 0xF60DD38: PetscInitialize (pinit.c:924) ==40426== by 0xF179E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40426== by 0xF179EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40426== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40426== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40426== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40426== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40426== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40426== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40426== ==40426== Open file descriptor 145: ==40426== ==40426== ==40426== Open file descriptor 142: ==40426== ==40426== ==40426== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==40426== ==40426== ==40426== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40426== ==40426== ==40426== ==40426== HEAP SUMMARY: ==40426== in use at exit: 15,444 bytes in 51 blocks ==40426== total heap usage: 1,382,394 allocs, 1,382,343 frees, 66,212,226 bytes allocated ==40426== ==40426== LEAK SUMMARY: ==40426== definitely lost: 0 bytes in 0 blocks ==40426== indirectly lost: 0 bytes in 0 blocks ==40426== possibly lost: 0 bytes in 0 blocks ==40426== still reachable: 56 bytes in 3 blocks ==40426== suppressed: 15,388 bytes in 48 blocks ==40426== Reachable blocks (those to which a pointer was found) are not shown. ==40426== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40426== ==40426== For lists of detected and suppressed errors, rerun with: -s ==40426== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)