==26175== Memcheck, a memory error detector ==26175== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26175== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26175== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26175== Parent PID: 24378 ==26175== ==26175== ==26175== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26175== Open file descriptor 12: ==26175== at 0xDBC40FD: pipe (pipe.c:29) ==26175== by 0x1972E07D: ??? ==26175== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26175== by 0xFE6E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26175== by 0xFE07D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26175== by 0xFFB5D38: PetscInitialize (pinit.c:924) ==26175== by 0xD7C7E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26175== by 0xD7C7EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26175== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26175== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26175== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26175== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26175== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26175== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26175== ==26175== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26175== at 0xDBC8A9C: __open_nocancel (open64_nocancel.c:39) ==26175== by 0xDB4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26175== by 0xD7FF822: ??? ==26175== by 0xD7FF96F: ??? ==26175== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26175== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26175== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26175== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26175== by 0xFE6E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26175== by 0xFE07D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26175== by 0xFFB5D38: PetscInitialize (pinit.c:924) ==26175== by 0xD7C7E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26175== by 0xD7C7EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26175== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26175== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26175== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26175== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26175== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26175== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26175== ==26175== Open file descriptor 145: ==26175== ==26175== ==26175== Open file descriptor 142: ==26175== ==26175== ==26175== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26175== ==26175== ==26175== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26175== ==26175== ==26175== ==26175== HEAP SUMMARY: ==26175== in use at exit: 15,412 bytes in 50 blocks ==26175== total heap usage: 41,969 allocs, 41,919 frees, 7,099,346 bytes allocated ==26175== ==26175== LEAK SUMMARY: ==26175== definitely lost: 0 bytes in 0 blocks ==26175== indirectly lost: 0 bytes in 0 blocks ==26175== possibly lost: 0 bytes in 0 blocks ==26175== still reachable: 24 bytes in 2 blocks ==26175== suppressed: 15,388 bytes in 48 blocks ==26175== Reachable blocks (those to which a pointer was found) are not shown. ==26175== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26175== ==26175== For lists of detected and suppressed errors, rerun with: -s ==26175== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)