==27598== Memcheck, a memory error detector ==27598== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27598== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27598== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27598== Parent PID: 24355 ==27598== ==27598== ==27598== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27598== Open file descriptor 12: ==27598== at 0xFE270FD: pipe (pipe.c:29) ==27598== by 0x1973607D: ??? ==27598== by 0x12CA44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27598== by 0x1071F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27598== by 0x106B8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27598== by 0x10864D38: PetscInitialize (pinit.c:924) ==27598== by 0xF180E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27598== by 0xF180EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27598== by 0x1D44C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27598== by 0x1CDDF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27598== by 0x1D1594: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27598== by 0x1D1434: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27598== by 0x1D1ACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27598== by 0x1CC215: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27598== ==27598== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27598== at 0xFE2BA9C: __open_nocancel (open64_nocancel.c:39) ==27598== by 0xFDAFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27598== by 0xF1B8822: ??? ==27598== by 0xF1B896F: ??? ==27598== by 0x12D496DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27598== by 0x12D49938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27598== by 0x12CFF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27598== by 0x12CA42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27598== by 0x1071F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27598== by 0x106B8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27598== by 0x10864D38: PetscInitialize (pinit.c:924) ==27598== by 0xF180E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27598== by 0xF180EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27598== by 0x1D44C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27598== by 0x1CDDF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27598== by 0x1D1594: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27598== by 0x1D1434: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27598== by 0x1D1ACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27598== by 0x1CC215: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27598== ==27598== Open file descriptor 145: ==27598== ==27598== ==27598== Open file descriptor 142: ==27598== ==27598== ==27598== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==27598== ==27598== ==27598== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27598== ==27598== ==27598== ==27598== HEAP SUMMARY: ==27598== in use at exit: 15,371 bytes in 47 blocks ==27598== total heap usage: 7,124,895 allocs, 7,124,848 frees, 6,740,288,818 bytes allocated ==27598== ==27598== LEAK SUMMARY: ==27598== definitely lost: 0 bytes in 0 blocks ==27598== indirectly lost: 0 bytes in 0 blocks ==27598== possibly lost: 0 bytes in 0 blocks ==27598== still reachable: 56 bytes in 3 blocks ==27598== suppressed: 15,315 bytes in 44 blocks ==27598== Reachable blocks (those to which a pointer was found) are not shown. ==27598== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27598== ==27598== For lists of detected and suppressed errors, rerun with: -s ==27598== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 29 from 29)