==39613== Memcheck, a memory error detector ==39613== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39613== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39613== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==39613== Parent PID: 24062 ==39613== ==39613== ==39613== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39613== Open file descriptor 12: ==39613== at 0x10D790FD: pipe (pipe.c:29) ==39613== by 0x1973507D: ??? ==39613== by 0x14CEC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39613== by 0x109C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39613== by 0x1095FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39613== by 0xF656D38: PetscInitialize (pinit.c:924) ==39613== by 0xF180E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39613== by 0xF180EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39613== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39613== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39613== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39613== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39613== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39613== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39613== ==39613== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39613== at 0x10D7DA9C: __open_nocancel (open64_nocancel.c:39) ==39613== by 0x10D01BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39613== by 0xF1B8822: ??? ==39613== by 0xF1B896F: ??? ==39613== by 0x14D916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39613== by 0x14D91938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39613== by 0x14D47922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39613== by 0x14CEC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39613== by 0x109C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39613== by 0x1095FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39613== by 0xF656D38: PetscInitialize (pinit.c:924) ==39613== by 0xF180E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39613== by 0xF180EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39613== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39613== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39613== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39613== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39613== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39613== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39613== ==39613== Open file descriptor 145: ==39613== ==39613== ==39613== Open file descriptor 142: ==39613== ==39613== ==39613== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==39613== ==39613== ==39613== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39613== ==39613== ==39613== ==39613== HEAP SUMMARY: ==39613== in use at exit: 15,444 bytes in 51 blocks ==39613== total heap usage: 563,296 allocs, 563,245 frees, 319,481,032 bytes allocated ==39613== ==39613== LEAK SUMMARY: ==39613== definitely lost: 0 bytes in 0 blocks ==39613== indirectly lost: 0 bytes in 0 blocks ==39613== possibly lost: 0 bytes in 0 blocks ==39613== still reachable: 56 bytes in 3 blocks ==39613== suppressed: 15,388 bytes in 48 blocks ==39613== Reachable blocks (those to which a pointer was found) are not shown. ==39613== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39613== ==39613== For lists of detected and suppressed errors, rerun with: -s ==39613== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)