==40754== Memcheck, a memory error detector ==40754== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40754== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40754== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==40754== Parent PID: 24062 ==40754== ==40754== ==40754== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40754== Open file descriptor 12: ==40754== at 0x125F70FD: pipe (pipe.c:29) ==40754== by 0x1B3F707D: ??? ==40754== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40754== by 0x11EFF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40754== by 0x11E98D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40754== by 0x6210D38: PetscInitialize (pinit.c:924) ==40754== by 0x11DBEE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40754== by 0x11DBEEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40754== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40754== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40754== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40754== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40754== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40754== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40754== ==40754== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40754== at 0x125FBA9C: __open_nocancel (open64_nocancel.c:39) ==40754== by 0x1257FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40754== by 0x11DF6822: ??? ==40754== by 0x11DF696F: ??? ==40754== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40754== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40754== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40754== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40754== by 0x11EFF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40754== by 0x11E98D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40754== by 0x6210D38: PetscInitialize (pinit.c:924) ==40754== by 0x11DBEE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40754== by 0x11DBEEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40754== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40754== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40754== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40754== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40754== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40754== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40754== ==40754== Open file descriptor 145: ==40754== ==40754== ==40754== Open file descriptor 142: ==40754== ==40754== ==40754== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==40754== ==40754== ==40754== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40754== ==40754== ==40754== ==40754== HEAP SUMMARY: ==40754== in use at exit: 15,387 bytes in 47 blocks ==40754== total heap usage: 16,177,778 allocs, 16,177,731 frees, 1,504,664,419 bytes allocated ==40754== ==40754== LEAK SUMMARY: ==40754== definitely lost: 0 bytes in 0 blocks ==40754== indirectly lost: 0 bytes in 0 blocks ==40754== possibly lost: 0 bytes in 0 blocks ==40754== still reachable: 56 bytes in 3 blocks ==40754== suppressed: 15,331 bytes in 44 blocks ==40754== Reachable blocks (those to which a pointer was found) are not shown. ==40754== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40754== ==40754== For lists of detected and suppressed errors, rerun with: -s ==40754== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 29 from 29)