==25811== Memcheck, a memory error detector ==25811== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25811== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25811== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==25811== Parent PID: 24062 ==25811== ==25811== ==25811== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25811== Open file descriptor 12: ==25811== at 0xDBCA0FD: pipe (pipe.c:29) ==25811== by 0x1973607D: ??? ==25811== by 0x12B204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25811== by 0xFE75418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25811== by 0xFE0ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25811== by 0xFFBCD38: PetscInitialize (pinit.c:924) ==25811== by 0xD7CDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25811== by 0xD7CDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25811== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25811== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25811== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25811== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25811== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25811== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25811== ==25811== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25811== at 0xDBCEA9C: __open_nocancel (open64_nocancel.c:39) ==25811== by 0xDB52BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25811== by 0xD805822: ??? ==25811== by 0xD80596F: ??? ==25811== by 0x12BC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25811== by 0x12BC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25811== by 0x12B7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25811== by 0x12B202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25811== by 0xFE75418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25811== by 0xFE0ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25811== by 0xFFBCD38: PetscInitialize (pinit.c:924) ==25811== by 0xD7CDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25811== by 0xD7CDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25811== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25811== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25811== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25811== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25811== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25811== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25811== ==25811== Open file descriptor 145: ==25811== ==25811== ==25811== Open file descriptor 142: ==25811== ==25811== ==25811== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==25811== ==25811== ==25811== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25811== ==25811== ==25811== ==25811== HEAP SUMMARY: ==25811== in use at exit: 15,412 bytes in 50 blocks ==25811== total heap usage: 41,967 allocs, 41,917 frees, 7,099,277 bytes allocated ==25811== ==25811== LEAK SUMMARY: ==25811== definitely lost: 0 bytes in 0 blocks ==25811== indirectly lost: 0 bytes in 0 blocks ==25811== possibly lost: 0 bytes in 0 blocks ==25811== still reachable: 24 bytes in 2 blocks ==25811== suppressed: 15,388 bytes in 48 blocks ==25811== Reachable blocks (those to which a pointer was found) are not shown. ==25811== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25811== ==25811== For lists of detected and suppressed errors, rerun with: -s ==25811== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)