==43503== Memcheck, a memory error detector ==43503== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43503== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43503== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==43503== Parent PID: 24099 ==43503== ==43503== ==43503== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43503== Open file descriptor 12: ==43503== at 0xA7FB0FD: pipe (pipe.c:29) ==43503== by 0x1435E07D: ??? ==43503== by 0xD9AB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43503== by 0xABC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43503== by 0xAB60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43503== by 0xB0A4D38: PetscInitialize (pinit.c:924) ==43503== by 0xA0DFE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43503== by 0xA0DFEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43503== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43503== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43503== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43503== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43503== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43503== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==43503== ==43503== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43503== at 0xA7FFA9C: __open_nocancel (open64_nocancel.c:39) ==43503== by 0xA783BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43503== by 0xA117822: ??? ==43503== by 0xA11796F: ??? ==43503== by 0xDA506DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43503== by 0xDA50938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43503== by 0xDA06922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43503== by 0xD9AB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43503== by 0xABC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43503== by 0xAB60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43503== by 0xB0A4D38: PetscInitialize (pinit.c:924) ==43503== by 0xA0DFE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43503== by 0xA0DFEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43503== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43503== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43503== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43503== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43503== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43503== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==43503== ==43503== Open file descriptor 145: ==43503== ==43503== ==43503== Open file descriptor 142: ==43503== ==43503== ==43503== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==43503== ==43503== ==43503== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43503== ==43503== ==43503== ==43503== HEAP SUMMARY: ==43503== in use at exit: 15,835 bytes in 56 blocks ==43503== total heap usage: 817,597 allocs, 817,541 frees, 110,772,723 bytes allocated ==43503== ==43503== LEAK SUMMARY: ==43503== definitely lost: 0 bytes in 0 blocks ==43503== indirectly lost: 0 bytes in 0 blocks ==43503== possibly lost: 0 bytes in 0 blocks ==43503== still reachable: 24 bytes in 2 blocks ==43503== suppressed: 15,811 bytes in 54 blocks ==43503== Reachable blocks (those to which a pointer was found) are not shown. ==43503== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43503== ==43503== For lists of detected and suppressed errors, rerun with: -s ==43503== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 56 from 30)