==27319== Memcheck, a memory error detector ==27319== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27319== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27319== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27319== Parent PID: 24440 ==27319== ==27319== ==27319== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27319== Open file descriptor 12: ==27319== at 0xFD410FD: pipe (pipe.c:29) ==27319== by 0x1972E07D: ??? ==27319== by 0x12B6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27319== by 0x1029C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27319== by 0x10235D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27319== by 0x103E1D38: PetscInitialize (pinit.c:924) ==27319== by 0xF516E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27319== by 0xF516EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27319== by 0x22246E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27319== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27319== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27319== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27319== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27319== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27319== ==27319== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27319== at 0xFD45A9C: __open_nocancel (open64_nocancel.c:39) ==27319== by 0xFCC9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27319== by 0xF54E822: ??? ==27319== by 0xF54E96F: ??? ==27319== by 0x12C146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27319== by 0x12C14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27319== by 0x12BCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27319== by 0x12B6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27319== by 0x1029C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27319== by 0x10235D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27319== by 0x103E1D38: PetscInitialize (pinit.c:924) ==27319== by 0xF516E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27319== by 0xF516EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27319== by 0x22246E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27319== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27319== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27319== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27319== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27319== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27319== ==27319== Open file descriptor 145: ==27319== ==27319== ==27319== Open file descriptor 142: ==27319== ==27319== ==27319== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==27319== ==27319== ==27319== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27319== ==27319== ==27319== ==27319== HEAP SUMMARY: ==27319== in use at exit: 35,142 bytes in 286 blocks ==27319== total heap usage: 8,105,315 allocs, 8,105,029 frees, 1,364,721,052 bytes allocated ==27319== ==27319== LEAK SUMMARY: ==27319== definitely lost: 0 bytes in 0 blocks ==27319== indirectly lost: 0 bytes in 0 blocks ==27319== possibly lost: 0 bytes in 0 blocks ==27319== still reachable: 56 bytes in 3 blocks ==27319== suppressed: 35,086 bytes in 283 blocks ==27319== Reachable blocks (those to which a pointer was found) are not shown. ==27319== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27319== ==27319== For lists of detected and suppressed errors, rerun with: -s ==27319== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)